miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21544 3' -57.9 NC_004812.1 + 55058 0.67 0.779099
Target:  5'- gUGUGGUGgcgaugaugagcUCGCGgauauaucgCCAGGCGgcccgcuggguGGGCGu -3'
miRNA:   3'- aACAUCAU------------AGCGCa--------GGUCCGC-----------CCCGC- -5'
21544 3' -57.9 NC_004812.1 + 5026 0.68 0.692028
Target:  5'- ---aGGUGggGCGg-CAGGCGGGGCa -3'
miRNA:   3'- aacaUCAUagCGCagGUCCGCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 95480 0.68 0.692028
Target:  5'- aUGUGGUuguugugCGCGggcgCCGGcgcgccGCGGGGCGc -3'
miRNA:   3'- aACAUCAua-----GCGCa---GGUC------CGCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 54606 0.68 0.702018
Target:  5'- -cGUGGc--CGCGgggaCGGGCGGGGCc -3'
miRNA:   3'- aaCAUCauaGCGCag--GUCCGCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 34994 0.68 0.728676
Target:  5'- gUUGUAGUAgacCGCGUUgAGGUcggcgagcucggcgGGGGCc -3'
miRNA:   3'- -AACAUCAUa--GCGCAGgUCCG--------------CCCCGc -5'
21544 3' -57.9 NC_004812.1 + 18467 0.68 0.731605
Target:  5'- -cGUGcGUGUaCGUGcccUCCAGGacgaGGGGCGg -3'
miRNA:   3'- aaCAU-CAUA-GCGC---AGGUCCg---CCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 95547 0.68 0.74131
Target:  5'- ---gGGcGUCGCGcCCcGGCGGGGuCGa -3'
miRNA:   3'- aacaUCaUAGCGCaGGuCCGCCCC-GC- -5'
21544 3' -57.9 NC_004812.1 + 17741 0.67 0.760428
Target:  5'- gUGUGGUGUC-CGUUCGuuuguugcgcGGUGuGGGCGg -3'
miRNA:   3'- aACAUCAUAGcGCAGGU----------CCGC-CCCGC- -5'
21544 3' -57.9 NC_004812.1 + 128594 0.67 0.760428
Target:  5'- ------cGUCG-GUCCaggcGGGCGGGGCGg -3'
miRNA:   3'- aacaucaUAGCgCAGG----UCCGCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 99193 0.69 0.651661
Target:  5'- -cGUGGUGcCGCccggcccccgGUCCAGGUGccGGGCGa -3'
miRNA:   3'- aaCAUCAUaGCG----------CAGGUCCGC--CCCGC- -5'
21544 3' -57.9 NC_004812.1 + 100139 0.7 0.621195
Target:  5'- -cGUGGcggCGCGggcggCgGGGCGGGGCu -3'
miRNA:   3'- aaCAUCauaGCGCa----GgUCCGCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 98478 0.71 0.560673
Target:  5'- gUGUAGUAcaGgGUCgUGGGUGGGGCGg -3'
miRNA:   3'- aACAUCAUagCgCAG-GUCCGCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 97179 0.77 0.262408
Target:  5'- -cGUGGgggucGUCGuCGUCCuGGCGGGGCu -3'
miRNA:   3'- aaCAUCa----UAGC-GCAGGuCCGCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 37449 0.76 0.281545
Target:  5'- cUUGUGGUG-CGUgGUCCAGuccGCGGGGCGg -3'
miRNA:   3'- -AACAUCAUaGCG-CAGGUC---CGCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 13124 0.75 0.315871
Target:  5'- --------cCGCGUCCAGGcCGGGGCGg -3'
miRNA:   3'- aacaucauaGCGCAGGUCC-GCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 85849 0.75 0.34554
Target:  5'- -cGUGGUGUgGCGaCCGGGCGaGuGGCGg -3'
miRNA:   3'- aaCAUCAUAgCGCaGGUCCGC-C-CCGC- -5'
21544 3' -57.9 NC_004812.1 + 7949 0.73 0.410661
Target:  5'- ---gGGgggCGCGUCCGGGgGGGGCc -3'
miRNA:   3'- aacaUCauaGCGCAGGUCCgCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 21747 0.72 0.473504
Target:  5'- -cGUGGUGaCGuCG-CCGGGCGGGGUc -3'
miRNA:   3'- aaCAUCAUaGC-GCaGGUCCGCCCCGc -5'
21544 3' -57.9 NC_004812.1 + 138456 0.71 0.521211
Target:  5'- -gGUGGUAcggggGCuGUCgGGGCGGGGCGc -3'
miRNA:   3'- aaCAUCAUag---CG-CAGgUCCGCCCCGC- -5'
21544 3' -57.9 NC_004812.1 + 155733 0.71 0.540821
Target:  5'- -gGUGGggggCGCG-CgCGGGCGGGGCu -3'
miRNA:   3'- aaCAUCaua-GCGCaG-GUCCGCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.