miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 1018 0.66 0.864624
Target:  5'- --gGGCCGCGcccCCGCgaggGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUcuuGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 138267 0.66 0.863876
Target:  5'- --cGGCCGCGGucgcgcGCCGC-GCCCugcgggcGGUGg -3'
miRNA:   3'- agaUCGGCGUCu-----UGGCGaUGGG-------CCAC- -5'
21545 3' -57.3 NC_004812.1 + 152733 0.66 0.860105
Target:  5'- cUCUGGCUGCGcGAGCUGCgccgcacgcgcgacGCgCUGGUGc -3'
miRNA:   3'- -AGAUCGGCGU-CUUGGCGa-------------UG-GGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 27225 0.66 0.860105
Target:  5'- cUCUGGCUGCGcGAGCUGCgccgcacgcgcgacGCgCUGGUGc -3'
miRNA:   3'- -AGAUCGGCGU-CUUGGCGa-------------UG-GGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 96451 0.66 0.857052
Target:  5'- --gAGCUGCAGuGGCUGCUgggggccgACCCGGc- -3'
miRNA:   3'- agaUCGGCGUC-UUGGCGA--------UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 100169 0.66 0.857052
Target:  5'- aUCgcGCCGcCAGGcccGCCGCccgccGCCCGGa- -3'
miRNA:   3'- -AGauCGGC-GUCU---UGGCGa----UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 98931 0.66 0.857052
Target:  5'- cCUGG-CGCucGACCGCgGCCCGGa- -3'
miRNA:   3'- aGAUCgGCGucUUGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 21107 0.66 0.857052
Target:  5'- ---cGCCGaCAGAGCCGC-ACCCa--- -3'
miRNA:   3'- agauCGGC-GUCUUGGCGaUGGGccac -5'
21545 3' -57.3 NC_004812.1 + 88999 0.66 0.857052
Target:  5'- cCUGGCCGCGGAccacCCGCU--UCGGc- -3'
miRNA:   3'- aGAUCGGCGUCUu---GGCGAugGGCCac -5'
21545 3' -57.3 NC_004812.1 + 23815 0.66 0.857052
Target:  5'- ---cGCCGCgcGGGGCgGCgACCCGGg- -3'
miRNA:   3'- agauCGGCG--UCUUGgCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 17893 0.66 0.857052
Target:  5'- ---cGCCGCGGGcccGCCGCgcCCgCGGUc -3'
miRNA:   3'- agauCGGCGUCU---UGGCGauGG-GCCAc -5'
21545 3' -57.3 NC_004812.1 + 122922 0.66 0.857052
Target:  5'- --cGGCCGCGacGCCGgUGCCCGa-- -3'
miRNA:   3'- agaUCGGCGUcuUGGCgAUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 86493 0.66 0.857052
Target:  5'- --gGGCCGCAGccaCGC-GCCCGGc- -3'
miRNA:   3'- agaUCGGCGUCuugGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 43131 0.66 0.85474
Target:  5'- cCUGGCgcagcacgcacuccCGCAGGguccgcgacACCGCggcgGCCCGGg- -3'
miRNA:   3'- aGAUCG--------------GCGUCU---------UGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 53892 0.66 0.852412
Target:  5'- -gUAGCCGUAGAACgGCgAcauguacacaaagucCCCGGUc -3'
miRNA:   3'- agAUCGGCGUCUUGgCGaU---------------GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 73234 0.66 0.849279
Target:  5'- --cGGCCuGCGGAccGCCGCcGCCCuGGg- -3'
miRNA:   3'- agaUCGG-CGUCU--UGGCGaUGGG-CCac -5'
21545 3' -57.3 NC_004812.1 + 76515 0.66 0.849279
Target:  5'- --aGGCCGUc-GACgGCUGCCUGGUc -3'
miRNA:   3'- agaUCGGCGucUUGgCGAUGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 1426 0.66 0.849279
Target:  5'- --cGGCCGCGGGgaggggccgggGCCGCgagGgCCGGg- -3'
miRNA:   3'- agaUCGGCGUCU-----------UGGCGa--UgGGCCac -5'
21545 3' -57.3 NC_004812.1 + 126934 0.66 0.849279
Target:  5'- --cGGCCGCGGGgaggggccgggGCCGCgagGgCCGGg- -3'
miRNA:   3'- agaUCGGCGUCU-----------UGGCGa--UgGGCCac -5'
21545 3' -57.3 NC_004812.1 + 98436 0.66 0.841312
Target:  5'- --cGGCCGCGGGGCgGCagGCgCGGg- -3'
miRNA:   3'- agaUCGGCGUCUUGgCGa-UGgGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.