Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21545 | 5' | -56.3 | NC_004812.1 | + | 26222 | 0.66 | 0.872814 |
Target: 5'- -gCUCUGGGaGGCGGgacUCgagggGcCGGUCu -3' miRNA: 3'- aaGAGACCCaUCGCCa--AGa----C-GCCAGc -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 37722 | 0.67 | 0.856961 |
Target: 5'- gUCUggggCUGGGUggggggcGGCGGccCUcGCGGUCGg -3' miRNA: 3'- aAGA----GACCCA-------UCGCCaaGA-CGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 6821 | 0.67 | 0.856961 |
Target: 5'- gUCUggggCUGGGUggggggcGGCGGccCUcGCGGUCGg -3' miRNA: 3'- aAGA----GACCCA-------UCGCCaaGA-CGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 1991 | 0.67 | 0.849886 |
Target: 5'- -----gGGGUGGCGGgUCccgccgGCGGUCGc -3' miRNA: 3'- aagagaCCCAUCGCCaAGa-----CGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 20413 | 0.68 | 0.789779 |
Target: 5'- ----gUGGGUgcGGCaGGcgCUGCGGUCGa -3' miRNA: 3'- aagagACCCA--UCG-CCaaGACGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 107173 | 0.69 | 0.722694 |
Target: 5'- gUCUCUugcgccGGGcgAGCGGagCgugGCGGUCGg -3' miRNA: 3'- aAGAGA------CCCa-UCGCCaaGa--CGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 112008 | 0.71 | 0.641491 |
Target: 5'- -----gGGGcUGGCGGggaUCUGCGGUCGc -3' miRNA: 3'- aagagaCCC-AUCGCCa--AGACGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 140769 | 0.72 | 0.559744 |
Target: 5'- gUCUCUguguggGGGUGGgGGUgcgaUGUGGUCGg -3' miRNA: 3'- aAGAGA------CCCAUCgCCAag--ACGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 72000 | 0.73 | 0.500335 |
Target: 5'- ---gCUGGGgcGCGGUcgUCUcGCGGUCGc -3' miRNA: 3'- aagaGACCCauCGCCA--AGA-CGCCAGC- -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 140247 | 0.78 | 0.285116 |
Target: 5'- -cCUCgcccaccGGGUAGCGGUUCUGCGG-Cu -3' miRNA: 3'- aaGAGa------CCCAUCGCCAAGACGCCaGc -5' |
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21545 | 5' | -56.3 | NC_004812.1 | + | 16389 | 1.07 | 0.00334 |
Target: 5'- gUUCUCUGGGUAGCGGUUCUGCGGUCGg -3' miRNA: 3'- -AAGAGACCCAUCGCCAAGACGCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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