miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21546 3' -57.5 NC_004812.1 + 81432 0.66 0.86885
Target:  5'- ---aUGGCGUcCGGGGCCcagggccccaggcgaUcGGGGGCCu -3'
miRNA:   3'- auucACUGCAcGCCUUGG---------------A-CCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 130459 0.66 0.866636
Target:  5'- gGAG-GGCGgccgGCGGGcgGCCggcggcggcgaggcgGGGGGCg -3'
miRNA:   3'- aUUCaCUGCa---CGCCU--UGGa--------------CCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 145813 0.66 0.865894
Target:  5'- -cGGUGugGgcgGCGGggUC-GGcGGCCc -3'
miRNA:   3'- auUCACugCa--CGCCuuGGaCCcCCGG- -5'
21546 3' -57.5 NC_004812.1 + 144857 0.66 0.865894
Target:  5'- gGAGa-GCGUGCGGAGCCccacGGCCg -3'
miRNA:   3'- aUUCacUGCACGCCUUGGacccCCGG- -5'
21546 3' -57.5 NC_004812.1 + 124236 0.66 0.865894
Target:  5'- ---cUGGCG-GCGG-GCCUggcgGGGGGCg -3'
miRNA:   3'- auucACUGCaCGCCuUGGA----CCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 153038 0.66 0.865894
Target:  5'- cGAG-GACGgccuggGCGcGGGCCUGaguucGGGCCu -3'
miRNA:   3'- aUUCaCUGCa-----CGC-CUUGGACc----CCCGG- -5'
21546 3' -57.5 NC_004812.1 + 11924 0.66 0.865894
Target:  5'- gGGGUGGgGcgGCGGGGCggGGGuGGCg -3'
miRNA:   3'- aUUCACUgCa-CGCCUUGgaCCC-CCGg -5'
21546 3' -57.5 NC_004812.1 + 54868 0.66 0.865894
Target:  5'- gGGGUGGCGggcacGgGGGACCca-GGGCCc -3'
miRNA:   3'- aUUCACUGCa----CgCCUUGGaccCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 47196 0.66 0.865894
Target:  5'- -----uGCGagGUGG-ACCUGGGGGCg -3'
miRNA:   3'- auucacUGCa-CGCCuUGGACCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 41884 0.66 0.865894
Target:  5'- ----cGGCGUcGCuGGAgcGCCUGGcggaGGGCCu -3'
miRNA:   3'- auucaCUGCA-CG-CCU--UGGACC----CCCGG- -5'
21546 3' -57.5 NC_004812.1 + 43060 0.66 0.865894
Target:  5'- -cGGUgGGgGUGCGGGGgCggUGGGGGUg -3'
miRNA:   3'- auUCA-CUgCACGCCUUgG--ACCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 43026 0.66 0.865894
Target:  5'- -cGGUgGGgGUGCGGGGgCggUGGGGGUg -3'
miRNA:   3'- auUCA-CUgCACGCCUUgG--ACCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 122137 0.66 0.865894
Target:  5'- cGAG-GACGgccuggGCGcGGGCCUGaguucGGGCCu -3'
miRNA:   3'- aUUCaCUGCa-----CGC-CUUGGACc----CCCGG- -5'
21546 3' -57.5 NC_004812.1 + 77469 0.66 0.865894
Target:  5'- --cGUGGCGagcggagGCGGGgcugggacccggGCCcGGcGGGCCa -3'
miRNA:   3'- auuCACUGCa------CGCCU------------UGGaCC-CCCGG- -5'
21546 3' -57.5 NC_004812.1 + 13399 0.66 0.86515
Target:  5'- cGGG-GGCGcgGCGGGggugacgGCCggagGGGuGGCCg -3'
miRNA:   3'- aUUCaCUGCa-CGCCU-------UGGa---CCC-CCGG- -5'
21546 3' -57.5 NC_004812.1 + 139936 0.66 0.858362
Target:  5'- gGGGUcGGCGgGUucuGGGGCg-GGGGGCCg -3'
miRNA:   3'- aUUCA-CUGCaCG---CCUUGgaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 135999 0.66 0.858362
Target:  5'- --cGUGACGgacgcccugaGCGGGcgccccGCCcGcGGGGCCa -3'
miRNA:   3'- auuCACUGCa---------CGCCU------UGGaC-CCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 104622 0.66 0.858362
Target:  5'- ----cGAUGaUGCGGAugUUGGuGGCCc -3'
miRNA:   3'- auucaCUGC-ACGCCUugGACCcCCGG- -5'
21546 3' -57.5 NC_004812.1 + 80590 0.66 0.858362
Target:  5'- -cGG-GGCcccGCGGGGCCcggcUGGGGGCUc -3'
miRNA:   3'- auUCaCUGca-CGCCUUGG----ACCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 35927 0.66 0.858362
Target:  5'- -cAGUGggGCGgcagGCGGGgcagcGCCgcggucacGGGGGCCc -3'
miRNA:   3'- auUCAC--UGCa---CGCCU-----UGGa-------CCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.