miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21546 3' -57.5 NC_004812.1 + 135999 0.66 0.858362
Target:  5'- --cGUGACGgacgcccugaGCGGGcgccccGCCcGcGGGGCCa -3'
miRNA:   3'- auuCACUGCa---------CGCCU------UGGaC-CCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 71374 0.66 0.850628
Target:  5'- gAAGUgGGCGUGgGGAcggGCgaggcGGGGGUCg -3'
miRNA:   3'- aUUCA-CUGCACgCCU---UGga---CCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 32831 0.66 0.850628
Target:  5'- cGAGUGGgG-GCGGGgggcgGCCcccaGGGcGGCCa -3'
miRNA:   3'- aUUCACUgCaCGCCU-----UGGa---CCC-CCGG- -5'
21546 3' -57.5 NC_004812.1 + 72141 0.66 0.850628
Target:  5'- gGAGg---GUGCGGGGCCggGGGaGGCg -3'
miRNA:   3'- aUUCacugCACGCCUUGGa-CCC-CCGg -5'
21546 3' -57.5 NC_004812.1 + 79446 0.66 0.850628
Target:  5'- gGGGUGGCGccuuccgcGCGGcGgC-GGGGGCCc -3'
miRNA:   3'- aUUCACUGCa-------CGCCuUgGaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 18783 0.66 0.842701
Target:  5'- -cAG-GACcuccCGGGGCCaGGGGGCCu -3'
miRNA:   3'- auUCaCUGcac-GCCUUGGaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 54614 0.66 0.842701
Target:  5'- cGGG-GACGgGCGGGGCC-GGaGaGGCCc -3'
miRNA:   3'- aUUCaCUGCaCGCCUUGGaCC-C-CCGG- -5'
21546 3' -57.5 NC_004812.1 + 101913 0.66 0.842701
Target:  5'- ----aGGCGcgGCGGucggGCCUcGGGGCCc -3'
miRNA:   3'- auucaCUGCa-CGCCu---UGGAcCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 155423 0.66 0.842701
Target:  5'- -uGGUGGCGgcggcgacgGCgacggcgacgagGGAGCg-GGGGGCCg -3'
miRNA:   3'- auUCACUGCa--------CG------------CCUUGgaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 6530 0.66 0.842701
Target:  5'- aGGGgggGGCG-G-GGGGCCgaGGGGGCUg -3'
miRNA:   3'- aUUCa--CUGCaCgCCUUGGa-CCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 109513 0.66 0.842701
Target:  5'- ----cGcCGcGaCGGAGCC-GGGGGCCg -3'
miRNA:   3'- auucaCuGCaC-GCCUUGGaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 152398 0.66 0.842701
Target:  5'- gAGGUaGCGcGUGGGGCCgggcgccgcGGGGGCg -3'
miRNA:   3'- aUUCAcUGCaCGCCUUGGa--------CCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 10573 0.66 0.842701
Target:  5'- ----cGGCGaGCGGuGCC-GGGGGCa -3'
miRNA:   3'- auucaCUGCaCGCCuUGGaCCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 121497 0.66 0.842701
Target:  5'- gAGGUaGCGcGUGGGGCCgggcgccgcGGGGGCg -3'
miRNA:   3'- aUUCAcUGCaCGCCUUGGa--------CCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 37431 0.66 0.842701
Target:  5'- aGGGgggGGCG-G-GGGGCCgaGGGGGCUg -3'
miRNA:   3'- aUUCa--CUGCaCgCCUUGGa-CCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 139348 0.66 0.842701
Target:  5'- gAAGgcggaGGCGgucGCGuGGGCCcGGGGGCa -3'
miRNA:   3'- aUUCa----CUGCa--CGC-CUUGGaCCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 13735 0.66 0.841897
Target:  5'- cAGGUcGGCGUagGCGGGGCuCUGGgcccuucGGGUCg -3'
miRNA:   3'- aUUCA-CUGCA--CGCCUUG-GACC-------CCCGG- -5'
21546 3' -57.5 NC_004812.1 + 29915 0.66 0.834585
Target:  5'- -uGGUGGCGgcggcgacgGCgacggcgcgagGGAGCg-GGGGGCCg -3'
miRNA:   3'- auUCACUGCa--------CG-----------CCUUGgaCCCCCGG- -5'
21546 3' -57.5 NC_004812.1 + 102899 0.66 0.834585
Target:  5'- -cGG-GGCG-GCGGAccggcGCCUcggGGGGGCg -3'
miRNA:   3'- auUCaCUGCaCGCCU-----UGGA---CCCCCGg -5'
21546 3' -57.5 NC_004812.1 + 86001 0.66 0.834585
Target:  5'- gAGGUGugGggugggugUGcCGGGGCgUGGGcGGUCa -3'
miRNA:   3'- aUUCACugC--------AC-GCCUUGgACCC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.