miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21546 5' -59.9 NC_004812.1 + 44005 0.66 0.788963
Target:  5'- cCGGCcUCCUCGGAGCCgggggcgucgUCCGcGUCCu -3'
miRNA:   3'- cGUCGaGGGGGCCUUGG----------AGGUcCAGG- -5'
21546 5' -59.9 NC_004812.1 + 59190 0.66 0.788963
Target:  5'- aGCAGCgggcagggCCCgCCGG--CgUgCGGGUCCa -3'
miRNA:   3'- -CGUCGa-------GGG-GGCCuuGgAgGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 80344 0.66 0.788963
Target:  5'- --uGCgaCCCCCGGGcCCgcacagCCGGGcCCg -3'
miRNA:   3'- cguCGa-GGGGGCCUuGGa-----GGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 15155 0.66 0.788963
Target:  5'- -gGGCUCCCCgcacgaccUGGAccGCCUCCGucGGcgCCc -3'
miRNA:   3'- cgUCGAGGGG--------GCCU--UGGAGGU--CCa-GG- -5'
21546 5' -59.9 NC_004812.1 + 69220 0.66 0.788963
Target:  5'- cGC-GC-CCCCaCGGGGCCcCCGGGg-- -3'
miRNA:   3'- -CGuCGaGGGG-GCCUUGGaGGUCCagg -5'
21546 5' -59.9 NC_004812.1 + 110890 0.66 0.788963
Target:  5'- uGCAGCgggCCCUCGugcaGGACaaCCGGGcCCu -3'
miRNA:   3'- -CGUCGa--GGGGGC----CUUGgaGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 31935 0.66 0.788963
Target:  5'- cGCcGCUCgcuCCCCGGGGCCagcgUCAGGa-- -3'
miRNA:   3'- -CGuCGAG---GGGGCCUUGGa---GGUCCagg -5'
21546 5' -59.9 NC_004812.1 + 82394 0.66 0.788963
Target:  5'- cCGGggCCCCUGGAGCUgcgCgAGG-CCa -3'
miRNA:   3'- cGUCgaGGGGGCCUUGGa--GgUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 94889 0.66 0.788963
Target:  5'- cGCGGgacCUCaccaCCCCGcu-CCUCgGGGUCCa -3'
miRNA:   3'- -CGUC---GAG----GGGGCcuuGGAGgUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 41917 0.66 0.788963
Target:  5'- cGUA-CUCCCCCGcGGCC-CCGGGcgcgCCc -3'
miRNA:   3'- -CGUcGAGGGGGCcUUGGaGGUCCa---GG- -5'
21546 5' -59.9 NC_004812.1 + 73078 0.66 0.788963
Target:  5'- cGC-GCUCCUCgCGGAgaACUUaCCGGG-CCu -3'
miRNA:   3'- -CGuCGAGGGG-GCCU--UGGA-GGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 30377 0.66 0.788081
Target:  5'- gGCGGCcgggucggggcucUCCUCCGGGggcgcggcgGCCUUCAGG-Ca -3'
miRNA:   3'- -CGUCG-------------AGGGGGCCU---------UGGAGGUCCaGg -5'
21546 5' -59.9 NC_004812.1 + 124508 0.66 0.780081
Target:  5'- -gGGCgccauggCCCaCCaGGcGACCUCCGGGgCCg -3'
miRNA:   3'- cgUCGa------GGG-GG-CC-UUGGAGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 106182 0.66 0.780081
Target:  5'- gGCGGgUUCCgCUGG-AUCUCCGGGUg- -3'
miRNA:   3'- -CGUCgAGGG-GGCCuUGGAGGUCCAgg -5'
21546 5' -59.9 NC_004812.1 + 72489 0.66 0.780081
Target:  5'- gGCGGCg-CCUCGGGgucggggggcgcGCCgccgCCGgGGUCCg -3'
miRNA:   3'- -CGUCGagGGGGCCU------------UGGa---GGU-CCAGG- -5'
21546 5' -59.9 NC_004812.1 + 85644 0.66 0.780081
Target:  5'- cGguGCUCUCCCGG-GCaggUCgAGGcgCCg -3'
miRNA:   3'- -CguCGAGGGGGCCuUGg--AGgUCCa-GG- -5'
21546 5' -59.9 NC_004812.1 + 45813 0.66 0.780081
Target:  5'- aGCAGCUCUagCGcGAacGCCUCCAccGuGUCCc -3'
miRNA:   3'- -CGUCGAGGggGC-CU--UGGAGGU--C-CAGG- -5'
21546 5' -59.9 NC_004812.1 + 52643 0.66 0.780081
Target:  5'- cGCAGC-CCCCCG----UUCC-GGUCCc -3'
miRNA:   3'- -CGUCGaGGGGGCcuugGAGGuCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 25546 0.66 0.780081
Target:  5'- uGCAcGCUCUCCgCGGGcGCCUcgCCGGGcUCg -3'
miRNA:   3'- -CGU-CGAGGGG-GCCU-UGGA--GGUCC-AGg -5'
21546 5' -59.9 NC_004812.1 + 8838 0.66 0.774692
Target:  5'- gGCAGCcucggcgaccccgcgUCCCgCgGGAGCC-CCGcGUCCc -3'
miRNA:   3'- -CGUCG---------------AGGG-GgCCUUGGaGGUcCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.