miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21546 5' -59.9 NC_004812.1 + 13928 1.12 0.000843
Target:  5'- uGCAGCUCCCCCGGAACCUCCAGGUCCu -3'
miRNA:   3'- -CGUCGAGGGGGCCUUGGAGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 29057 0.82 0.108593
Target:  5'- cGCGGCUCCUCCGGAcgucCUUCCGGG-CCu -3'
miRNA:   3'- -CGUCGAGGGGGCCUu---GGAGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 67037 0.81 0.126015
Target:  5'- gGCGGCgaaCCgCCCGccgucgucgggcuGAGCCUCCGGGUCCg -3'
miRNA:   3'- -CGUCGa--GG-GGGC-------------CUUGGAGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 46728 0.81 0.126332
Target:  5'- uCGGCUCCCgCaGAGCCacgUCCAGGUCCa -3'
miRNA:   3'- cGUCGAGGGgGcCUUGG---AGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 32026 0.8 0.136176
Target:  5'- gGCcGC-CCCCCGGGGgCUCCAGGcCCg -3'
miRNA:   3'- -CGuCGaGGGGGCCUUgGAGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 153089 0.8 0.143126
Target:  5'- cGCGGCcccgCCCCCGGGGCCgccggccCCGGGcCCg -3'
miRNA:   3'- -CGUCGa---GGGGGCCUUGGa------GGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 27581 0.8 0.143126
Target:  5'- cGCGGCcccgCCCCCGGGGCCgccggccCCGGGcCCg -3'
miRNA:   3'- -CGUCGa---GGGGGCCUUGGa------GGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 74083 0.8 0.146722
Target:  5'- gGCGGCgCCuCCCGGGGCCUCgCGGGcCCc -3'
miRNA:   3'- -CGUCGaGG-GGGCCUUGGAG-GUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 80668 0.78 0.19201
Target:  5'- -aGGCUCCCCUccucccgcACCUCCAGGUCCc -3'
miRNA:   3'- cgUCGAGGGGGccu-----UGGAGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 74221 0.77 0.216393
Target:  5'- cGCAGCUCCa--GGGGCC-CCGGGUCUc -3'
miRNA:   3'- -CGUCGAGGgggCCUUGGaGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 124953 0.76 0.237766
Target:  5'- aGCGGCUgUCCCCGGc-CCUCCAGGacgagcUCCu -3'
miRNA:   3'- -CGUCGA-GGGGGCCuuGGAGGUCC------AGG- -5'
21546 5' -59.9 NC_004812.1 + 62126 0.75 0.275607
Target:  5'- cGCGGCggCCCggaggCCGGAucggcggcgcgggcgGCCUCCGGGUUCu -3'
miRNA:   3'- -CGUCGa-GGG-----GGCCU---------------UGGAGGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 84925 0.75 0.279391
Target:  5'- aGCAcGCcCCCCCGG-GCCgCCGGGUCg -3'
miRNA:   3'- -CGU-CGaGGGGGCCuUGGaGGUCCAGg -5'
21546 5' -59.9 NC_004812.1 + 59717 0.75 0.28579
Target:  5'- aGCGGCgaggcgggCCCCCGGGucgucuggguuCCggCCGGGUCCc -3'
miRNA:   3'- -CGUCGa-------GGGGGCCUu----------GGa-GGUCCAGG- -5'
21546 5' -59.9 NC_004812.1 + 31877 0.75 0.298933
Target:  5'- gGCGGuCUCCCCCGGccagcGCCUCCcacccgcGGUCg -3'
miRNA:   3'- -CGUC-GAGGGGGCCu----UGGAGGu------CCAGg -5'
21546 5' -59.9 NC_004812.1 + 62875 0.75 0.298933
Target:  5'- cGCGGCggCCCCgucugccgCGGAGCCcggcUCCGGGUCa -3'
miRNA:   3'- -CGUCGa-GGGG--------GCCUUGG----AGGUCCAGg -5'
21546 5' -59.9 NC_004812.1 + 55461 0.75 0.298933
Target:  5'- cGCAGCUCCCUgGGAucgcucGCCUaCUGGG-CCg -3'
miRNA:   3'- -CGUCGAGGGGgCCU------UGGA-GGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 134871 0.75 0.305678
Target:  5'- gGCGGCagacgcCCCCCGGucccucACCUCCAGG-CUg -3'
miRNA:   3'- -CGUCGa-----GGGGGCCu-----UGGAGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 32161 0.75 0.305678
Target:  5'- cGCGGCggggcgCCCCCgcgcGGAccggguGCCUCCGGG-CCa -3'
miRNA:   3'- -CGUCGa-----GGGGG----CCU------UGGAGGUCCaGG- -5'
21546 5' -59.9 NC_004812.1 + 35109 0.74 0.319516
Target:  5'- gGCAGCgUCaCCgGGAACCgcagcgUCAGGUCCa -3'
miRNA:   3'- -CGUCG-AGgGGgCCUUGGa-----GGUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.