miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 62593 0.66 0.832314
Target:  5'- --cGCCGGGcACGCccACGGccgguuucuGGACGCCa -3'
miRNA:   3'- ccaCGGCCCcUGUG--UGCU---------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 84044 0.66 0.848103
Target:  5'- uGGUGUCGGcGAUACcauggccggaACGGAGGgGCCc -3'
miRNA:   3'- -CCACGGCCcCUGUG----------UGCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 44730 0.66 0.870393
Target:  5'- gGGUcCCGGGa--GCACGAGGGgcucguucauCGCCGg -3'
miRNA:   3'- -CCAcGGCCCcugUGUGCUUCU----------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 65379 0.66 0.848103
Target:  5'- cGGUGgCGcGGaucGACGCgcuccGCGAgcuGGACGCCGc -3'
miRNA:   3'- -CCACgGC-CC---CUGUG-----UGCU---UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 131514 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 36899 0.66 0.863156
Target:  5'- aGG-GUCGGGGGgACGagGggGACgguGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUgUGUg-CuuCUG---CGGC- -5'
21547 3' -58.3 NC_004812.1 + 130256 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 94498 0.66 0.840297
Target:  5'- --gGCCGGGGccaGCGCGCGGuucuGGugGaCGg -3'
miRNA:   3'- ccaCGGCCCC---UGUGUGCU----UCugCgGC- -5'
21547 3' -58.3 NC_004812.1 + 51540 0.66 0.862422
Target:  5'- cGGcGCCGGGGGgccagugugcgccCGCGgcCGGAGcgGCGCCu -3'
miRNA:   3'- -CCaCGGCCCCU-------------GUGU--GCUUC--UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 121682 0.66 0.855725
Target:  5'- --cGgCGGGcGGCGCGaGAGGACGCgGa -3'
miRNA:   3'- ccaCgGCCC-CUGUGUgCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 79601 0.66 0.832315
Target:  5'- -aUGCUGGaGGAgGCGCGcgcgcGCGCCGa -3'
miRNA:   3'- ccACGGCC-CCUgUGUGCuuc--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 81903 0.66 0.829886
Target:  5'- cGGUGCUGGGGcucguggcggacGCGCAcuacccgcggcuccCGGccaaguaccaGGGCGCCa -3'
miRNA:   3'- -CCACGGCCCC------------UGUGU--------------GCU----------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 114689 0.66 0.870393
Target:  5'- gGGgcgGCCGcGGGACcggaauGCcguCGAAGAgGCCc -3'
miRNA:   3'- -CCa--CGGC-CCCUG------UGu--GCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 87896 0.66 0.835528
Target:  5'- cGGgGCCGGGGggcuuuauauccuccGCGUACGccagcaGGGACGCCa -3'
miRNA:   3'- -CCaCGGCCCC---------------UGUGUGC------UUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98674 0.66 0.855725
Target:  5'- gGGUcgaGCCGGGGcGgGCGCGGucGAacCGCCGn -3'
miRNA:   3'- -CCA---CGGCCCC-UgUGUGCUu-CU--GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 989 0.66 0.863156
Target:  5'- gGGUcGCCGGGGuC-CugGggGuccgggguCGCCc -3'
miRNA:   3'- -CCA-CGGCCCCuGuGugCuuCu-------GCGGc -5'
21547 3' -58.3 NC_004812.1 + 31486 0.66 0.855725
Target:  5'- -aUGCgGGGGGCcccCugGAGGGCGgCu -3'
miRNA:   3'- ccACGgCCCCUGu--GugCUUCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 35928 0.66 0.832315
Target:  5'- --aGUgGGGcGGCAgGCGggGcaGCGCCGc -3'
miRNA:   3'- ccaCGgCCC-CUGUgUGCuuC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 48909 0.66 0.863156
Target:  5'- gGGUGCuCGcGGGcCACGCcguGGuCGCCa -3'
miRNA:   3'- -CCACG-GC-CCCuGUGUGcu-UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 111968 0.66 0.848103
Target:  5'- --cGCCGGGGuCGgA-GAAGGgGCCGc -3'
miRNA:   3'- ccaCGGCCCCuGUgUgCUUCUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.