miRNA display CGI


Results 81 - 100 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 97774 0.66 0.832315
Target:  5'- -uUGCCGGcgccGGCGCcaacgccuCGGAGGCGCCa -3'
miRNA:   3'- ccACGGCCc---CUGUGu-------GCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 69972 0.66 0.848103
Target:  5'- --gGCCGGGGGCuCugGugGAGACggGUCGg -3'
miRNA:   3'- ccaCGGCCCCUGuGugC--UUCUG--CGGC- -5'
21547 3' -58.3 NC_004812.1 + 15929 0.66 0.848103
Target:  5'- gGGUGgggucgCGGGGuCACGCGuAGACGUa- -3'
miRNA:   3'- -CCACg-----GCCCCuGUGUGCuUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 79601 0.66 0.832315
Target:  5'- -aUGCUGGaGGAgGCGCGcgcgcGCGCCGa -3'
miRNA:   3'- ccACGGCC-CCUgUGUGCuuc--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91525 0.66 0.855725
Target:  5'- ---uCCGcGGGGCGCGCGGccaGGGCGgCGg -3'
miRNA:   3'- ccacGGC-CCCUGUGUGCU---UCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 3718 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 8305 0.66 0.855725
Target:  5'- --cGCCGGGaGcuccgcgcguACGCcgACGAGGAgCGCCGa -3'
miRNA:   3'- ccaCGGCCC-C----------UGUG--UGCUUCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30805 0.66 0.848103
Target:  5'- aGGgaggGCgGGGGACGg--GAGGGgGCCGa -3'
miRNA:   3'- -CCa---CGgCCCCUGUgugCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 145558 0.66 0.863156
Target:  5'- uGGUcCCGGGGucggGCGCcacCGgcGGCGCCc -3'
miRNA:   3'- -CCAcGGCCCC----UGUGu--GCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 75174 0.66 0.832315
Target:  5'- --cGCCuGGGGCcCugGGccccGGACGCCa -3'
miRNA:   3'- ccaCGGcCCCUGuGugCU----UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 17031 0.66 0.863156
Target:  5'- gGGUGaaGGGGucgGCG-GggGGCGCCu -3'
miRNA:   3'- -CCACggCCCCug-UGUgCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 62179 0.66 0.840297
Target:  5'- --gGCCgGGGGGC-CGCGAacagggggcGGACGUCu -3'
miRNA:   3'- ccaCGG-CCCCUGuGUGCU---------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 133179 0.66 0.863156
Target:  5'- --gGCCGccaGGCACACcAGGACGCCa -3'
miRNA:   3'- ccaCGGCcc-CUGUGUGcUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 124851 0.66 0.855725
Target:  5'- cGGUGgCGuGGGGCGgGCGcc-GCGCCc -3'
miRNA:   3'- -CCACgGC-CCCUGUgUGCuucUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 62935 0.66 0.848103
Target:  5'- cGGUGgCgaGGGcGACACGCGggGGucCGCa- -3'
miRNA:   3'- -CCACgG--CCC-CUGUGUGCuuCU--GCGgc -5'
21547 3' -58.3 NC_004812.1 + 67311 0.66 0.832315
Target:  5'- cGG-GCuCGGGGAgGCgaGCGcGGGCGCUc -3'
miRNA:   3'- -CCaCG-GCCCCUgUG--UGCuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 3919 0.66 0.832315
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 120864 0.66 0.84578
Target:  5'- -cUGCgGGGGcugGCGCuguagcggggcgggGCGGAGACGCgGg -3'
miRNA:   3'- ccACGgCCCC---UGUG--------------UGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 129522 0.66 0.840297
Target:  5'- aGG-GCCccGGGACGCugGAc-AUGCCGg -3'
miRNA:   3'- -CCaCGGc-CCCUGUGugCUucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 87896 0.66 0.835528
Target:  5'- cGGgGCCGGGGggcuuuauauccuccGCGUACGccagcaGGGACGCCa -3'
miRNA:   3'- -CCaCGGCCCC---------------UGUGUGC------UUCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.