miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 81903 0.66 0.829886
Target:  5'- cGGUGCUGGGGcucguggcggacGCGCAcuacccgcggcuccCGGccaaguaccaGGGCGCCa -3'
miRNA:   3'- -CCACGGCCCC------------UGUGU--------------GCU----------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 144350 0.66 0.832314
Target:  5'- aGGUGCU--GGACACGgugGucGACGCCGa -3'
miRNA:   3'- -CCACGGccCCUGUGUg--CuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30805 0.66 0.848103
Target:  5'- aGGgaggGCgGGGGACGg--GAGGGgGCCGa -3'
miRNA:   3'- -CCa---CGgCCCCUGUgugCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 98783 0.66 0.840297
Target:  5'- uGGgccGCCGaGGcGGCGC-UGAGGugGCCc -3'
miRNA:   3'- -CCa--CGGC-CC-CUGUGuGCUUCugCGGc -5'
21547 3' -58.3 NC_004812.1 + 6005 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 14731 0.66 0.840297
Target:  5'- cGGgaugaaCCGGGGGaGCAUGccGAUGCCGu -3'
miRNA:   3'- -CCac----GGCCCCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 75174 0.66 0.832315
Target:  5'- --cGCCuGGGGCcCugGGccccGGACGCCa -3'
miRNA:   3'- ccaCGGcCCCUGuGugCU----UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 73442 0.66 0.848103
Target:  5'- ---uCCGGGGcCGCGCGccacGGCGCCa -3'
miRNA:   3'- ccacGGCCCCuGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 61098 0.66 0.851174
Target:  5'- --cGCCGGGGucgaggcggcgccccGCgGCGCGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCC---------------UG-UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 62935 0.66 0.848103
Target:  5'- cGGUGgCgaGGGcGACACGCGggGGucCGCa- -3'
miRNA:   3'- -CCACgG--CCC-CUGUGUGCuuCU--GCGgc -5'
21547 3' -58.3 NC_004812.1 + 81104 0.66 0.855725
Target:  5'- cGUGCaccGGGCGCugGggGGCguGCCGc -3'
miRNA:   3'- cCACGgccCCUGUGugCuuCUG--CGGC- -5'
21547 3' -58.3 NC_004812.1 + 58850 0.66 0.832314
Target:  5'- cGGcGCCGGcaaaGAcCACGCGGuucuuGACGCCa -3'
miRNA:   3'- -CCaCGGCCc---CU-GUGUGCUu----CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 67311 0.66 0.832315
Target:  5'- cGG-GCuCGGGGAgGCgaGCGcGGGCGCUc -3'
miRNA:   3'- -CCaCG-GCCCCUgUG--UGCuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 42917 0.67 0.798745
Target:  5'- cGGcGCCGGGcGCagagcucgucgaGCGCGAGcACGCCGc -3'
miRNA:   3'- -CCaCGGCCCcUG------------UGUGCUUcUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 54624 0.67 0.807369
Target:  5'- cGGgGCCGGagaggcccgcGGGCucacCACGggGGuCGCCGc -3'
miRNA:   3'- -CCaCGGCC----------CCUGu---GUGCuuCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 45769 0.67 0.79613
Target:  5'- cGUGCuCGGGaaaguggguuuccaGACAgGCGAGGAUGCg- -3'
miRNA:   3'- cCACG-GCCC--------------CUGUgUGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 28691 0.67 0.798745
Target:  5'- --cGCUGGGGGCugGCc---GCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGugUGcuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 154199 0.67 0.798745
Target:  5'- --cGCUGGGGGCugGCc---GCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGugUGcuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 67193 0.67 0.789981
Target:  5'- cGGgGUCGGGGGugacCGCgGCGgcGGCGCCc -3'
miRNA:   3'- -CCaCGGCCCCU----GUG-UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 125091 0.67 0.789981
Target:  5'- cGUGCCuccGGGCGCugGGGaGCGCCa -3'
miRNA:   3'- cCACGGcc-CCUGUGugCUUcUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.