miRNA display CGI


Results 121 - 140 of 612 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 25914 0.67 0.824161
Target:  5'- --cGCCGcGGGCGCGCGucgcGAGA-GCCGg -3'
miRNA:   3'- ccaCGGCcCCUGUGUGC----UUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 151087 0.67 0.815843
Target:  5'- --cGaCGGGGAgGacgGCGggGACGCCu -3'
miRNA:   3'- ccaCgGCCCCUgUg--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 152212 0.67 0.824161
Target:  5'- aGUGCgGcGGGAcCACcCGGGcGACGCCu -3'
miRNA:   3'- cCACGgC-CCCU-GUGuGCUU-CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 37029 0.67 0.824161
Target:  5'- gGGcUGCCGGGGaagGCGgGCGAggggaaGGGgGUCGg -3'
miRNA:   3'- -CC-ACGGCCCC---UGUgUGCU------UCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 46226 0.67 0.824161
Target:  5'- --aGCuCGGGGGCGCA-GAAGAgCGCg- -3'
miRNA:   3'- ccaCG-GCCCCUGUGUgCUUCU-GCGgc -5'
21547 3' -58.3 NC_004812.1 + 6128 0.67 0.824161
Target:  5'- gGGcUGCCGGGGaagGCGgGCGAggggaaGGGgGUCGg -3'
miRNA:   3'- -CC-ACGGCCCC---UGUgUGCU------UCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 58762 0.67 0.823336
Target:  5'- --gGCCGGcGGCGCccggcgaGCGAGGGCGCgGu -3'
miRNA:   3'- ccaCGGCCcCUGUG-------UGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 30885 0.67 0.815843
Target:  5'- cGGggGCCGGGGcUGCGCGAcccGGGC-CCu -3'
miRNA:   3'- -CCa-CGGCCCCuGUGUGCU---UCUGcGGc -5'
21547 3' -58.3 NC_004812.1 + 121311 0.67 0.824161
Target:  5'- aGUGCgGcGGGAcCACcCGGGcGACGCCu -3'
miRNA:   3'- cCACGgC-CCCU-GUGuGCUU-CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 147746 0.67 0.824161
Target:  5'- gGGU-CCGcGGGACGCGgGGcucccgcgGGACGCgGg -3'
miRNA:   3'- -CCAcGGC-CCCUGUGUgCU--------UCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 2849 0.67 0.824161
Target:  5'- --cGCaCGcGGcgcGACGC-CGAGGACGCCGu -3'
miRNA:   3'- ccaCG-GC-CC---CUGUGuGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91589 0.67 0.815843
Target:  5'- cGGUGCUGGGu-CGCGCGucggaaauggGGGAC-CCGg -3'
miRNA:   3'- -CCACGGCCCcuGUGUGC----------UUCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 145844 0.67 0.813317
Target:  5'- cGG-GcCCGGGGACggagucucgcgcagGCGCGucGcCGCCGu -3'
miRNA:   3'- -CCaC-GGCCCCUG--------------UGUGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 68464 0.67 0.824161
Target:  5'- uGGUgGCCGcGGcGCGCACGAuGGCGUa- -3'
miRNA:   3'- -CCA-CGGC-CCcUGUGUGCUuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 125349 0.67 0.824161
Target:  5'- --cGCCGGGcGACgaccucccgGCGCGcuuugccGACGCCGa -3'
miRNA:   3'- ccaCGGCCC-CUG---------UGUGCuu-----CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21364 0.67 0.807369
Target:  5'- cGGaaCCGGGcguaGACGCGCGAGcuccGCGCCGc -3'
miRNA:   3'- -CCacGGCCC----CUGUGUGCUUc---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 98525 0.67 0.807369
Target:  5'- cGG-GCCGGGuuCguguGCGCGGccucggcgccGGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCcuG----UGUGCU----------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 139526 0.67 0.824161
Target:  5'- aGGggGgCGGGGACAgcgcCACGggGgGCGCg- -3'
miRNA:   3'- -CCa-CgGCCCCUGU----GUGCuuC-UGCGgc -5'
21547 3' -58.3 NC_004812.1 + 16752 0.67 0.824161
Target:  5'- aGGgcgccCCGGGGGCcgcggGCcCGAAGACGCg- -3'
miRNA:   3'- -CCac---GGCCCCUG-----UGuGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 66361 0.67 0.815843
Target:  5'- gGGgaaGCUGGGaGCGgggGCGggGGCGCCa -3'
miRNA:   3'- -CCa--CGGCCCcUGUg--UGCuuCUGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.