miRNA display CGI


Results 61 - 80 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 99218 0.74 0.403636
Target:  5'- aGGUGCCGGGcGaACGCgucgGCGggGGCggggGCCGu -3'
miRNA:   3'- -CCACGGCCC-C-UGUG----UGCuuCUG----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 137583 0.74 0.395383
Target:  5'- --cGUCGGuGGACAUAUGGAG-CGCCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19904 0.74 0.429038
Target:  5'- gGGUGCUGGGGGC-CGgaaaGgcGACGCCc -3'
miRNA:   3'- -CCACGGCCCCUGuGUg---CuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 44155 0.74 0.437712
Target:  5'- cGGacgGCCGGaGGGCGCuCGggGGCcgaGCCGg -3'
miRNA:   3'- -CCa--CGGCC-CCUGUGuGCuuCUG---CGGC- -5'
21547 3' -58.3 NC_004812.1 + 120381 0.74 0.411998
Target:  5'- --gGCCGGGGGCGCguACGcGGGCGaCCGc -3'
miRNA:   3'- ccaCGGCCCCUGUG--UGCuUCUGC-GGC- -5'
21547 3' -58.3 NC_004812.1 + 60311 0.74 0.441209
Target:  5'- cGGUGCCaGGugaacucgcaggugaGGuuGCGCGggGGCGCCa -3'
miRNA:   3'- -CCACGG-CC---------------CCugUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 91140 0.74 0.395383
Target:  5'- gGGgccgGUCGGGGACGgGCGGuccGGGgGCCGg -3'
miRNA:   3'- -CCa---CGGCCCCUGUgUGCU---UCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91453 0.74 0.395383
Target:  5'- --cGCCGGuGGGCGucCACGAGGACGCg- -3'
miRNA:   3'- ccaCGGCC-CCUGU--GUGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 82071 0.74 0.403636
Target:  5'- gGGUGCCGuGGGAgAUgaACGccGACGCCc -3'
miRNA:   3'- -CCACGGC-CCCUgUG--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 29745 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 39293 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 79015 0.74 0.411998
Target:  5'- --gGCCGGGGACGCccGCGAc--CGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUG--UGCUucuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 109317 0.73 0.455357
Target:  5'- --cGCCGGcGGCGCugGAGGcgGCGCCGc -3'
miRNA:   3'- ccaCGGCCcCUGUGugCUUC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 24949 0.73 0.467934
Target:  5'- cGGUGgaGGGGACACuccgggaaguggcucGCGAGGACGUa- -3'
miRNA:   3'- -CCACggCCCCUGUG---------------UGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 8212 0.73 0.482523
Target:  5'- --gGCCGGGGGCcCGCGucGGACGCg- -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCu-UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 23520 0.73 0.491752
Target:  5'- gGGUGCUGcuGGGGCccCACGucGGCGCCa -3'
miRNA:   3'- -CCACGGC--CCCUGu-GUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 19762 0.73 0.455357
Target:  5'- cGGUGCgGGGGuccCAgGCGAcGcGCGCCGg -3'
miRNA:   3'- -CCACGgCCCCu--GUgUGCUuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 44789 0.73 0.464322
Target:  5'- cGGcGgCGGGGACGaccaacaccucCGCGggGGCGCUGu -3'
miRNA:   3'- -CCaCgGCCCCUGU-----------GUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 7735 0.73 0.446485
Target:  5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3'
miRNA:   3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 25465 0.73 0.464322
Target:  5'- uGGUgGUCGcGcGGGCACACGAGGAUGUCc -3'
miRNA:   3'- -CCA-CGGC-C-CCUGUGUGCUUCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.