Results 101 - 120 of 612 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21547 | 3' | -58.3 | NC_004812.1 | + | 140997 | 0.72 | 0.510448 |
Target: 5'- --aGCCGGGGGC-CACGcAGGgGCCc -3' miRNA: 3'- ccaCGGCCCCUGuGUGCuUCUgCGGc -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 4349 | 0.72 | 0.510448 |
Target: 5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3' miRNA: 3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 129736 | 0.72 | 0.510448 |
Target: 5'- cGG-GCCGGGGGCG-GCGgcGGCGgCGg -3' miRNA: 3'- -CCaCGGCCCCUGUgUGCuuCUGCgGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 73776 | 0.72 | 0.518959 |
Target: 5'- gGGUGCCcGcGGGCucCGCGAgcggggcGGGCGCCGg -3' miRNA: 3'- -CCACGGcC-CCUGu-GUGCU-------UCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 27691 | 0.72 | 0.501062 |
Target: 5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3' miRNA: 3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 45463 | 0.72 | 0.501062 |
Target: 5'- aGGUGCCGGaGGgaGCGCACGGcgagcauGGCGgCGg -3' miRNA: 3'- -CCACGGCC-CC--UGUGUGCUu------CUGCgGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 5397 | 0.72 | 0.501062 |
Target: 5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3' miRNA: 3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 106580 | 0.72 | 0.510448 |
Target: 5'- --cGCCaGGGGGCcCGCGggGgggaGCGCCGc -3' miRNA: 3'- ccaCGG-CCCCUGuGUGCuuC----UGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 13392 | 0.72 | 0.510448 |
Target: 5'- cGGggGUCGGGGGCGCGgCGggGGugacgGCCGg -3' miRNA: 3'- -CCa-CGGCCCCUGUGU-GCuuCUg----CGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 29348 | 0.72 | 0.519908 |
Target: 5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3' miRNA: 3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 87062 | 0.72 | 0.519908 |
Target: 5'- cGGcGCCGcgggcaGGGGCGCGgGggGGCgGCCGg -3' miRNA: 3'- -CCaCGGC------CCCUGUGUgCuuCUG-CGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 75449 | 0.72 | 0.528479 |
Target: 5'- cGUGCCGGGGuucugcuucauggGCcacuuucugGCGCGcuGGCGCCGg -3' miRNA: 3'- cCACGGCCCC-------------UG---------UGUGCuuCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 120263 | 0.72 | 0.539025 |
Target: 5'- aGGUGCCccggacGGcGGGCAuggacCACGGccaGGACGCCGu -3' miRNA: 3'- -CCACGG------CC-CCUGU-----GUGCU---UCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 101439 | 0.72 | 0.529435 |
Target: 5'- uGGggGCCGGGGGCgccgGCACcGAGugGgCCGu -3' miRNA: 3'- -CCa-CGGCCCCUG----UGUGcUUCugC-GGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 137786 | 0.72 | 0.529435 |
Target: 5'- cGGUGgCGGGaucuGGCGggcgGCGAGGGCGCCGc -3' miRNA: 3'- -CCACgGCCC----CUGUg---UGCUUCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 128180 | 0.72 | 0.547707 |
Target: 5'- --cGCaGGcGGccucgacGCGCGCGAAGACGCCGg -3' miRNA: 3'- ccaCGgCC-CC-------UGUGUGCUUCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 140889 | 0.72 | 0.545774 |
Target: 5'- gGGUGgC-GGGACGCGCGggGGCaucugcccguaccuGCCGc -3' miRNA: 3'- -CCACgGcCCCUGUGUGCuuCUG--------------CGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 71225 | 0.72 | 0.529435 |
Target: 5'- cGGgcgGCCGcGaGGGCGCgGCGggGACGgCGg -3' miRNA: 3'- -CCa--CGGC-C-CCUGUG-UGCuuCUGCgGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 154856 | 0.72 | 0.519908 |
Target: 5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3' miRNA: 3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 20708 | 0.72 | 0.529435 |
Target: 5'- aGGUaGCgcucguagUGGGGGCgcaucaGCGCGAGGACGUCGg -3' miRNA: 3'- -CCA-CG--------GCCCCUG------UGUGCUUCUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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