miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 114682 0.75 0.355789
Target:  5'- cGGUGCCGGGcGCGCcCGggGcCGCgGg -3'
miRNA:   3'- -CCACGGCCCcUGUGuGCuuCuGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 30532 0.75 0.371287
Target:  5'- aGGcGCCgGGGGGCAgGCGcAGGGCGCgCGg -3'
miRNA:   3'- -CCaCGG-CCCCUGUgUGC-UUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 72053 0.75 0.371287
Target:  5'- cGGgggGUCGGGGGCGCugGggG-CGgCGg -3'
miRNA:   3'- -CCa--CGGCCCCUGUGugCuuCuGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 31828 0.75 0.371287
Target:  5'- uGGUGCCGcGGGACcaGCGAGaccgaGCGCCGg -3'
miRNA:   3'- -CCACGGC-CCCUGugUGCUUc----UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 102945 0.75 0.371287
Target:  5'- --cGCgGGGGugGCGgGggGGCGUCGg -3'
miRNA:   3'- ccaCGgCCCCugUGUgCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 12127 0.75 0.379207
Target:  5'- gGGgggGuuGGGGGCGCGCG---GCGCCGg -3'
miRNA:   3'- -CCa--CggCCCCUGUGUGCuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 141939 0.75 0.379207
Target:  5'- --gGCCgcGGGGugGCACGGcccgaAGGCGCCGu -3'
miRNA:   3'- ccaCGG--CCCCugUGUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 100279 0.75 0.387239
Target:  5'- cGG-GcCCGGGGGCcgaGCACGGAcGCGCCGc -3'
miRNA:   3'- -CCaC-GGCCCCUG---UGUGCUUcUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138365 0.75 0.387239
Target:  5'- cGGUuCCGcGGGACGgGCGggGGCGCg- -3'
miRNA:   3'- -CCAcGGC-CCCUGUgUGCuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 91140 0.74 0.395383
Target:  5'- gGGgccgGUCGGGGACGgGCGGuccGGGgGCCGg -3'
miRNA:   3'- -CCa---CGGCCCCUGUgUGCU---UCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 57580 0.74 0.395383
Target:  5'- --aGCCGagacGGGGCGCGCGAGGccCGCCGa -3'
miRNA:   3'- ccaCGGC----CCCUGUGUGCUUCu-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137583 0.74 0.395383
Target:  5'- --cGUCGGuGGACAUAUGGAG-CGCCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91453 0.74 0.395383
Target:  5'- --cGCCGGuGGGCGucCACGAGGACGCg- -3'
miRNA:   3'- ccaCGGCC-CCUGU--GUGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 155253 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 99218 0.74 0.403636
Target:  5'- aGGUGCCGGGcGaACGCgucgGCGggGGCggggGCCGu -3'
miRNA:   3'- -CCACGGCCC-C-UGUG----UGCuuCUG----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 29745 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 82071 0.74 0.403636
Target:  5'- gGGUGCCGuGGGAgAUgaACGccGACGCCc -3'
miRNA:   3'- -CCACGGC-CCCUgUG--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 8392 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 77243 0.74 0.411998
Target:  5'- gGGUGUgGGGcGCugcccuCGCGggGGCGCCGc -3'
miRNA:   3'- -CCACGgCCCcUGu-----GUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 39293 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.