miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 153199 0.72 0.501062
Target:  5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 101876 0.72 0.501062
Target:  5'- aGGUacccCCGGGGGCGCGcCGGgcuaGGGCGCCc -3'
miRNA:   3'- -CCAc---GGCCCCUGUGU-GCU----UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 13392 0.72 0.510448
Target:  5'- cGGggGUCGGGGGCGCGgCGggGGugacgGCCGg -3'
miRNA:   3'- -CCa-CGGCCCCUGUGU-GCuuCUg----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 140997 0.72 0.510448
Target:  5'- --aGCCGGGGGC-CACGcAGGgGCCc -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 106580 0.72 0.510448
Target:  5'- --cGCCaGGGGGCcCGCGggGgggaGCGCCGc -3'
miRNA:   3'- ccaCGG-CCCCUGuGUGCuuC----UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 35250 0.72 0.510448
Target:  5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3'
miRNA:   3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 4349 0.72 0.510448
Target:  5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3'
miRNA:   3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 129736 0.72 0.510448
Target:  5'- cGG-GCCGGGGGCG-GCGgcGGCGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 73776 0.72 0.518959
Target:  5'- gGGUGCCcGcGGGCucCGCGAgcggggcGGGCGCCGg -3'
miRNA:   3'- -CCACGGcC-CCUGu-GUGCU-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 154856 0.72 0.519908
Target:  5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3'
miRNA:   3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 29348 0.72 0.519908
Target:  5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3'
miRNA:   3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 87062 0.72 0.519908
Target:  5'- cGGcGCCGcgggcaGGGGCGCGgGggGGCgGCCGg -3'
miRNA:   3'- -CCaCGGC------CCCUGUGUgCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 75449 0.72 0.528479
Target:  5'- cGUGCCGGGGuucugcuucauggGCcacuuucugGCGCGcuGGCGCCGg -3'
miRNA:   3'- cCACGGCCCC-------------UG---------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137786 0.72 0.529435
Target:  5'- cGGUGgCGGGaucuGGCGggcgGCGAGGGCGCCGc -3'
miRNA:   3'- -CCACgGCCC----CUGUg---UGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 101439 0.72 0.529435
Target:  5'- uGGggGCCGGGGGCgccgGCACcGAGugGgCCGu -3'
miRNA:   3'- -CCa-CGGCCCCUG----UGUGcUUCugC-GGC- -5'
21547 3' -58.3 NC_004812.1 + 20708 0.72 0.529435
Target:  5'- aGGUaGCgcucguagUGGGGGCgcaucaGCGCGAGGACGUCGg -3'
miRNA:   3'- -CCA-CG--------GCCCCUG------UGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 71225 0.72 0.529435
Target:  5'- cGGgcgGCCGcGaGGGCGCgGCGggGACGgCGg -3'
miRNA:   3'- -CCa--CGGC-C-CCUGUG-UGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 117267 0.72 0.539025
Target:  5'- cGUGCUGGGGGCguucgagcgcgGCACGGccgaccAGAUGCUGc -3'
miRNA:   3'- cCACGGCCCCUG-----------UGUGCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 120263 0.72 0.539025
Target:  5'- aGGUGCCccggacGGcGGGCAuggacCACGGccaGGACGCCGu -3'
miRNA:   3'- -CCACGG------CC-CCUGU-----GUGCU---UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 88341 0.72 0.539025
Target:  5'- cGUGCCGgccuccGGGGCccuGgACGAGGACGUCGa -3'
miRNA:   3'- cCACGGC------CCCUG---UgUGCUUCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.