miRNA display CGI


Results 121 - 140 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 19119 0.72 0.542878
Target:  5'- --cGCCGGGGuugaccaggagcccCGCGCGAAGcaggcgGCGCCGa -3'
miRNA:   3'- ccaCGGCCCCu-------------GUGUGCUUC------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 140889 0.72 0.545774
Target:  5'- gGGUGgC-GGGACGCGCGggGGCaucugcccguaccuGCCGc -3'
miRNA:   3'- -CCACgGcCCCUGUGUGCuuCUG--------------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 2672 0.72 0.547707
Target:  5'- --cGCaGGcGGccucgacGCGCGCGAAGACGCCGg -3'
miRNA:   3'- ccaCGgCC-CC-------UGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 128180 0.72 0.547707
Target:  5'- --cGCaGGcGGccucgacGCGCGCGAAGACGCCGg -3'
miRNA:   3'- ccaCGgCC-CC-------UGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91016 0.72 0.548675
Target:  5'- cGGUGuuGaGGGGCACGCGguGACucaCCGc -3'
miRNA:   3'- -CCACggC-CCCUGUGUGCuuCUGc--GGC- -5'
21547 3' -58.3 NC_004812.1 + 4200 0.72 0.548675
Target:  5'- cGGgaacGgCGGGGAC-CGCGgcGGCGUCGg -3'
miRNA:   3'- -CCa---CgGCCCCUGuGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129077 0.71 0.558377
Target:  5'- --cGCCGGcGGGCAgGCGgcGGCGgCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 118407 0.71 0.558377
Target:  5'- aGG-GCCGGGcGACGgGCGAcAGGCgGCCu -3'
miRNA:   3'- -CCaCGGCCC-CUGUgUGCU-UCUG-CGGc -5'
21547 3' -58.3 NC_004812.1 + 3569 0.71 0.558377
Target:  5'- --cGCCGGcGGGCAgGCGgcGGCGgCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 149308 0.71 0.558377
Target:  5'- aGG-GCCGGGcGACGgGCGAcAGGCgGCCu -3'
miRNA:   3'- -CCaCGGCCC-CUGUgUGCU-UCUG-CGGc -5'
21547 3' -58.3 NC_004812.1 + 115843 0.71 0.558377
Target:  5'- cGGUGCCaGGGGAacccCGCuCGggGcucccGCGCCa -3'
miRNA:   3'- -CCACGG-CCCCU----GUGuGCuuC-----UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 17221 0.71 0.56715
Target:  5'- cGGUGCCGcuggagcGGGGgACACGGAGgguGCGgCGg -3'
miRNA:   3'- -CCACGGC-------CCCUgUGUGCUUC---UGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 50695 0.71 0.568127
Target:  5'- --cGCCGGGGACucgGCGAGccGCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGug-UGCUUc-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 100865 0.71 0.568127
Target:  5'- gGGgccGCgGGGGAgGCGgggGAGGGCGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUgUGUg--CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 37045 0.71 0.568127
Target:  5'- aGGUGCUGGGaGGC-CAUGAgcaGGAuccCGCCGu -3'
miRNA:   3'- -CCACGGCCC-CUGuGUGCU---UCU---GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5346 0.71 0.568127
Target:  5'- cGGgGUCGGcGGGgGCGCGgcGGCGUCGa -3'
miRNA:   3'- -CCaCGGCC-CCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 101993 0.71 0.568127
Target:  5'- --cGCgGGGGGuCGCGCGAcucgcGGCGCCGc -3'
miRNA:   3'- ccaCGgCCCCU-GUGUGCUu----CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130854 0.71 0.568127
Target:  5'- cGGgGUCGGcGGGgGCGCGgcGGCGUCGa -3'
miRNA:   3'- -CCaCGGCC-CCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155686 0.71 0.576938
Target:  5'- --cGCCGGcGGGCucggcgcGCGCGAGGGCGUgGg -3'
miRNA:   3'- ccaCGGCC-CCUG-------UGUGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 1213 0.71 0.577919
Target:  5'- --gGCCGGGGGCGgcgcCGCGggGGCuCCu -3'
miRNA:   3'- ccaCGGCCCCUGU----GUGCuuCUGcGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.