miRNA display CGI


Results 61 - 80 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 31486 0.66 0.855725
Target:  5'- -aUGCgGGGGGCcccCugGAGGGCGgCu -3'
miRNA:   3'- ccACGgCCCCUGu--GugCUUCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 152583 0.66 0.855725
Target:  5'- --cGgCGGGcGGCGCGaGAGGACGCgGa -3'
miRNA:   3'- ccaCgGCCC-CUGUGUgCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 106778 0.66 0.855725
Target:  5'- cGGcGUCGggcGGGGCGCGCGgGAGggggccucGCGCCGa -3'
miRNA:   3'- -CCaCGGC---CCCUGUGUGC-UUC--------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 124851 0.66 0.855725
Target:  5'- cGGUGgCGuGGGGCGgGCGcc-GCGCCc -3'
miRNA:   3'- -CCACgGC-CCCUGUgUGCuucUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 5081 0.66 0.855725
Target:  5'- cGGgggGCCGGGGuCcgGC-CGggGAgGCgGg -3'
miRNA:   3'- -CCa--CGGCCCCuG--UGuGCuuCUgCGgC- -5'
21547 3' -58.3 NC_004812.1 + 79435 0.66 0.854971
Target:  5'- cGGcGgCGGGGACGgcgccgcCGCGGgcGGGCuGCCGg -3'
miRNA:   3'- -CCaCgGCCCCUGU-------GUGCU--UCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 61098 0.66 0.851174
Target:  5'- --cGCCGGGGucgaggcggcgccccGCgGCGCGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCC---------------UG-UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 57421 0.66 0.848103
Target:  5'- cGGggGCCGGGcGGCAcCACGggGuccAUGCa- -3'
miRNA:   3'- -CCa-CGGCCC-CUGU-GUGCuuC---UGCGgc -5'
21547 3' -58.3 NC_004812.1 + 30805 0.66 0.848103
Target:  5'- aGGgaggGCgGGGGACGg--GAGGGgGCCGa -3'
miRNA:   3'- -CCa---CGgCCCCUGUgugCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 114093 0.66 0.848103
Target:  5'- uGUGCCGGGG-CGgACGGauGGGCGg-- -3'
miRNA:   3'- cCACGGCCCCuGUgUGCU--UCUGCggc -5'
21547 3' -58.3 NC_004812.1 + 147991 0.66 0.848103
Target:  5'- uGGcGCCGGGcGGCGgGgcCGAGGGCGaCGg -3'
miRNA:   3'- -CCaCGGCCC-CUGUgU--GCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 73442 0.66 0.848103
Target:  5'- ---uCCGGGGcCGCGCGccacGGCGCCa -3'
miRNA:   3'- ccacGGCCCCuGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 111968 0.66 0.848103
Target:  5'- --cGCCGGGGuCGgA-GAAGGgGCCGc -3'
miRNA:   3'- ccaCGGCCCCuGUgUgCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 84044 0.66 0.848103
Target:  5'- uGGUGUCGGcGAUACcauggccggaACGGAGGgGCCc -3'
miRNA:   3'- -CCACGGCCcCUGUG----------UGCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 3718 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 65379 0.66 0.848103
Target:  5'- cGGUGgCGcGGaucGACGCgcuccGCGAgcuGGACGCCGc -3'
miRNA:   3'- -CCACgGC-CC---CUGUG-----UGCU---UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 15929 0.66 0.848103
Target:  5'- gGGUGgggucgCGGGGuCACGCGuAGACGUa- -3'
miRNA:   3'- -CCACg-----GCCCCuGUGUGCuUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 62935 0.66 0.848103
Target:  5'- cGGUGgCgaGGGcGACACGCGggGGucCGCa- -3'
miRNA:   3'- -CCACgG--CCC-CUGUGUGCuuCU--GCGgc -5'
21547 3' -58.3 NC_004812.1 + 122779 0.66 0.848103
Target:  5'- --cGCCGaGGGugAC-CGAGGACGgggcgggcucccCCGg -3'
miRNA:   3'- ccaCGGC-CCCugUGuGCUUCUGC------------GGC- -5'
21547 3' -58.3 NC_004812.1 + 129226 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.