miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 3919 0.66 0.832315
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 35928 0.66 0.832315
Target:  5'- --aGUgGGGcGGCAgGCGggGcaGCGCCGc -3'
miRNA:   3'- ccaCGgCCC-CUGUgUGCuuC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 136596 0.66 0.832315
Target:  5'- -uUGCCGcGacGCGCGCGGAGACGgCGc -3'
miRNA:   3'- ccACGGC-CccUGUGUGCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 97774 0.66 0.832315
Target:  5'- -uUGCCGGcgccGGCGCcaacgccuCGGAGGCGCCa -3'
miRNA:   3'- ccACGGCCc---CUGUGu-------GCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 75174 0.66 0.832315
Target:  5'- --cGCCuGGGGCcCugGGccccGGACGCCa -3'
miRNA:   3'- ccaCGGcCCCUGuGugCU----UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 30631 0.66 0.832315
Target:  5'- cGG-GCCGcGcGGACGCGgGGcgcgGGACGCgCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGUGUgCU----UCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 156139 0.66 0.832314
Target:  5'- cGG-GCCGcGcGGACGCGgGGcgcgGGACGCgCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGUGUgCU----UCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 129427 0.66 0.832314
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 58850 0.66 0.832314
Target:  5'- cGGcGCCGGcaaaGAcCACGCGGuucuuGACGCCa -3'
miRNA:   3'- -CCaCGGCCc---CU-GUGUGCUu----CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 62593 0.66 0.832314
Target:  5'- --cGCCGGGcACGCccACGGccgguuucuGGACGCCa -3'
miRNA:   3'- ccaCGGCCCcUGUG--UGCU---------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 144350 0.66 0.832314
Target:  5'- aGGUGCU--GGACACGgugGucGACGCCGa -3'
miRNA:   3'- -CCACGGccCCUGUGUg--CuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 80834 0.66 0.832314
Target:  5'- --aGUCGGGGGCAC-CGugguGGUGCCGa -3'
miRNA:   3'- ccaCGGCCCCUGUGuGCuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 81903 0.66 0.829886
Target:  5'- cGGUGCUGGGGcucguggcggacGCGCAcuacccgcggcuccCGGccaaguaccaGGGCGCCa -3'
miRNA:   3'- -CCACGGCCCC------------UGUGU--------------GCU----------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 71378 0.67 0.827442
Target:  5'- uGG-GCgUGGGGACGgGCGAggcgggggucgcagcGGGCGCgGg -3'
miRNA:   3'- -CCaCG-GCCCCUGUgUGCU---------------UCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 52273 0.67 0.824984
Target:  5'- gGGgagGCgGGGGAUGgGCGGAGAaggucacggggcccgGCCGg -3'
miRNA:   3'- -CCa--CGgCCCCUGUgUGCUUCUg--------------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 121311 0.67 0.824161
Target:  5'- aGUGCgGcGGGAcCACcCGGGcGACGCCu -3'
miRNA:   3'- cCACGgC-CCCU-GUGuGCUU-CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 152212 0.67 0.824161
Target:  5'- aGUGCgGcGGGAcCACcCGGGcGACGCCu -3'
miRNA:   3'- cCACGgC-CCCU-GUGuGCUU-CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 46226 0.67 0.824161
Target:  5'- --aGCuCGGGGGCGCA-GAAGAgCGCg- -3'
miRNA:   3'- ccaCG-GCCCCUGUGUgCUUCU-GCGgc -5'
21547 3' -58.3 NC_004812.1 + 30846 0.67 0.824161
Target:  5'- --cGcCCGGGGGCGCGCccggccauGGGGgGCCGa -3'
miRNA:   3'- ccaC-GGCCCCUGUGUGc-------UUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 74652 0.67 0.824161
Target:  5'- --gGUCGGGGACGCccuGCGGAccacgugccGCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGUG---UGCUUc--------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.