miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 5878 0.69 0.686578
Target:  5'- cGG-GCCGGGGG-GCGCGGgcgcgggcucagGGGcCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUgUGUGCU------------UCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5966 0.69 0.676758
Target:  5'- gGGgagGCCgcggGGGGGCGaguCGCGGggugguAGGCGCCGg -3'
miRNA:   3'- -CCa--CGG----CCCCUGU---GUGCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 6005 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 6128 0.67 0.824161
Target:  5'- gGGcUGCCGGGGaagGCGgGCGAggggaaGGGgGUCGg -3'
miRNA:   3'- -CC-ACGGCCCC---UGUgUGCU------UCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 6192 0.7 0.637214
Target:  5'- cGGagGCCcGGGGCGCccgGCGGcccgcGGACGCCGc -3'
miRNA:   3'- -CCa-CGGcCCCUGUG---UGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 6532 0.66 0.863156
Target:  5'- gGGgggGCgGGGGGC-CGaGggGGCuGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUGuGUgCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 6797 0.71 0.587748
Target:  5'- cGUGCCucgGGGGGCGCGCc-GGGCGUCu -3'
miRNA:   3'- cCACGG---CCCCUGUGUGcuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 7439 0.68 0.760155
Target:  5'- aGGcGaCCGGGGACGCcgccccucgccuccGCGggGAcCGCgCGc -3'
miRNA:   3'- -CCaC-GGCCCCUGUG--------------UGCuuCU-GCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 7609 0.7 0.657024
Target:  5'- cGGgGUCGGaGGuCGCGcCGGAGACGCgCGg -3'
miRNA:   3'- -CCaCGGCC-CCuGUGU-GCUUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 7637 0.68 0.762919
Target:  5'- nGGcgGCCGGGGucgGgGCGCGAAGcUGCgGg -3'
miRNA:   3'- -CCa-CGGCCCC---UgUGUGCUUCuGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 7673 0.69 0.71575
Target:  5'- cGG-GCCGGgagcggggguGGGCggGCGCGggGgucGCGCCGa -3'
miRNA:   3'- -CCaCGGCC----------CCUG--UGUGCuuC---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 7735 0.73 0.446485
Target:  5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3'
miRNA:   3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 7914 0.78 0.266381
Target:  5'- aGGUGUCGGGGGC-UGCGgcGcGCGCCGg -3'
miRNA:   3'- -CCACGGCCCCUGuGUGCuuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 7963 0.69 0.696355
Target:  5'- gGGgggGCCGagagacgcGGAgGCGCGcGGGCGCCGg -3'
miRNA:   3'- -CCa--CGGCc-------CCUgUGUGCuUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8212 0.73 0.482523
Target:  5'- --gGCCGGGGGCcCGCGucGGACGCg- -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCu-UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 8245 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8305 0.66 0.855725
Target:  5'- --cGCCGGGaGcuccgcgcguACGCcgACGAGGAgCGCCGa -3'
miRNA:   3'- ccaCGGCCC-C----------UGUG--UGCUUCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8392 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 10580 0.88 0.058096
Target:  5'- cGGUGCCGGGGGCAuuuaugcgcCGCGGAG-CGCCGa -3'
miRNA:   3'- -CCACGGCCCCUGU---------GUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 11053 0.7 0.6273
Target:  5'- cGGUGgCGcccgaccccGGGACcaGCGCGAaccgGGGCGCCGc -3'
miRNA:   3'- -CCACgGC---------CCCUG--UGUGCU----UCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.