miRNA display CGI


Results 61 - 80 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 11072 0.68 0.744319
Target:  5'- cGUGCCGGGGAgGCGaucgcuguCGGAGuCGUa- -3'
miRNA:   3'- cCACGGCCCCUgUGU--------GCUUCuGCGgc -5'
21547 3' -58.3 NC_004812.1 + 11578 0.68 0.733928
Target:  5'- --cGCUGGGG-CAC-CGGgggggagGGACGCCGc -3'
miRNA:   3'- ccaCGGCCCCuGUGuGCU-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 11594 0.73 0.454465
Target:  5'- --cGCCGGGGACACGgCGGgcGGGCucggcguGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUGU-GCU--UCUG-------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 12063 0.7 0.61739
Target:  5'- cGGUGCCGuGGaGACuguACGCGAugguugcgggAGACGCgGc -3'
miRNA:   3'- -CCACGGC-CC-CUG---UGUGCU----------UCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 12127 0.75 0.379207
Target:  5'- gGGgggGuuGGGGGCGCGCG---GCGCCGg -3'
miRNA:   3'- -CCa--CggCCCCUGUGUGCuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 12604 1.09 0.002059
Target:  5'- gGGUGCCGGGGACACACGAAGACGCCGc -3'
miRNA:   3'- -CCACGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 12839 0.69 0.719599
Target:  5'- aGG-GCCGauGGGGCGCGgGAGGAaccgcggggaagaacCGCCGc -3'
miRNA:   3'- -CCaCGGC--CCCUGUGUgCUUCU---------------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 12904 0.69 0.706082
Target:  5'- cGGUGCCcccGGGGCgGCGCGgcGAgCGCuCGa -3'
miRNA:   3'- -CCACGGc--CCCUG-UGUGCuuCU-GCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 13392 0.72 0.510448
Target:  5'- cGGggGUCGGGGGCGCGgCGggGGugacgGCCGg -3'
miRNA:   3'- -CCa-CGGCCCCUGUGU-GCuuCUg----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 14094 0.68 0.753669
Target:  5'- -uUGCUGcGGGugAaCGCGggGagcGCGCCGu -3'
miRNA:   3'- ccACGGC-CCCugU-GUGCuuC---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 14472 0.67 0.824161
Target:  5'- aGG-GCgCGGGGGCGgggccCugGAugguGACGUCGg -3'
miRNA:   3'- -CCaCG-GCCCCUGU-----GugCUu---CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 14731 0.66 0.840297
Target:  5'- cGGgaugaaCCGGGGGaGCAUGccGAUGCCGu -3'
miRNA:   3'- -CCac----GGCCCCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 15929 0.66 0.848103
Target:  5'- gGGUGgggucgCGGGGuCACGCGuAGACGUa- -3'
miRNA:   3'- -CCACg-----GCCCCuGUGUGCuUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 15951 0.67 0.807369
Target:  5'- cGGgcuucgGCCGGGcGACggacgccccgcgGC-CGgcGGCGCCGa -3'
miRNA:   3'- -CCa-----CGGCCC-CUG------------UGuGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 16126 0.68 0.772059
Target:  5'- uGGUGgCGGGGGCcccCGuggUGggGGCgGCCGu -3'
miRNA:   3'- -CCACgGCCCCUGu--GU---GCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 16506 0.68 0.725351
Target:  5'- --gGCCGGGGG-GCGCGggGGCGaugCGc -3'
miRNA:   3'- ccaCGGCCCCUgUGUGCuuCUGCg--GC- -5'
21547 3' -58.3 NC_004812.1 + 16752 0.67 0.824161
Target:  5'- aGGgcgccCCGGGGGCcgcggGCcCGAAGACGCg- -3'
miRNA:   3'- -CCac---GGCCCCUG-----UGuGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 16800 0.67 0.781083
Target:  5'- uGGgGCgGGGGGaguCugGAggacGGGCGCCGc -3'
miRNA:   3'- -CCaCGgCCCCUgu-GugCU----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 16860 0.7 0.647124
Target:  5'- cGGUcGCgGGGGAC-CGCGAccuggucggcGugGCCGa -3'
miRNA:   3'- -CCA-CGgCCCCUGuGUGCUu---------CugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 17031 0.66 0.863156
Target:  5'- gGGUGaaGGGGucgGCG-GggGGCGCCu -3'
miRNA:   3'- -CCACggCCCCug-UGUgCuuCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.