miRNA display CGI


Results 81 - 100 of 612 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 17152 0.66 0.863156
Target:  5'- cGG-GCCGGGGGgAguCGu-GGCGuCCGa -3'
miRNA:   3'- -CCaCGGCCCCUgUguGCuuCUGC-GGC- -5'
21547 3' -58.3 NC_004812.1 + 17221 0.71 0.56715
Target:  5'- cGGUGCCGcuggagcGGGGgACACGGAGgguGCGgCGg -3'
miRNA:   3'- -CCACGGC-------CCCUgUGUGCUUC---UGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 17484 0.66 0.863156
Target:  5'- cGGaUGCCGcGGugGCGCucccGGACGUCGc -3'
miRNA:   3'- -CC-ACGGCcCCugUGUGcu--UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 17641 0.7 0.657024
Target:  5'- cGGUGCCGGGG-Cuu-CGGu--CGCCGg -3'
miRNA:   3'- -CCACGGCCCCuGuguGCUucuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 17841 0.71 0.591688
Target:  5'- aGGcgGCCGGGaucgagcgccacagaGGCAcCGCGggGGCGaCCGg -3'
miRNA:   3'- -CCa-CGGCCC---------------CUGU-GUGCuuCUGC-GGC- -5'
21547 3' -58.3 NC_004812.1 + 18328 0.66 0.860947
Target:  5'- cGGUGCCGGaccacgGGAUgucugucgacaucgGCcacCGgcGGCGCCGg -3'
miRNA:   3'- -CCACGGCC------CCUG--------------UGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 18956 0.7 0.61739
Target:  5'- gGGUGCCcucguccguccGGGACACA-GAaaaaagGGACGCCGu -3'
miRNA:   3'- -CCACGGc----------CCCUGUGUgCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19119 0.72 0.542878
Target:  5'- --cGCCGGGGuugaccaggagcccCGCGCGAAGcaggcgGCGCCGa -3'
miRNA:   3'- ccaCGGCCCCu-------------GUGUGCUUC------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19154 0.73 0.446485
Target:  5'- --cGCgGGGGGCGCgGCGgcGGCGCCc -3'
miRNA:   3'- ccaCGgCCCCUGUG-UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 19486 0.76 0.333408
Target:  5'- --cGCUGGGGAUACuCGggGugGCUGc -3'
miRNA:   3'- ccaCGGCCCCUGUGuGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19670 0.76 0.32618
Target:  5'- --cGCCGGGGGC-CGCGggGACGagggcggcCCGg -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuuCUGC--------GGC- -5'
21547 3' -58.3 NC_004812.1 + 19762 0.73 0.455357
Target:  5'- cGGUGCgGGGGuccCAgGCGAcGcGCGCCGg -3'
miRNA:   3'- -CCACGgCCCCu--GUgUGCUuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19894 0.71 0.60749
Target:  5'- cGGcgGCgGGGGACGCGgCGGcccGCGCCGc -3'
miRNA:   3'- -CCa-CGgCCCCUGUGU-GCUuc-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19904 0.74 0.429038
Target:  5'- gGGUGCUGGGGGC-CGgaaaGgcGACGCCc -3'
miRNA:   3'- -CCACGGCCCCUGuGUg---CuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 20626 0.67 0.778389
Target:  5'- cGUcUCGGGGGCgGCGuccgacguguuuccCGAGGACGCCGc -3'
miRNA:   3'- cCAcGGCCCCUG-UGU--------------GCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 20708 0.72 0.529435
Target:  5'- aGGUaGCgcucguagUGGGGGCgcaucaGCGCGAGGACGUCGg -3'
miRNA:   3'- -CCA-CG--------GCCCCUG------UGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21020 0.67 0.789981
Target:  5'- --gGCCgcGGGGGUGCAUGggGugGCUGc -3'
miRNA:   3'- ccaCGG--CCCCUGUGUGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21068 0.73 0.445604
Target:  5'- --gGCCGGGGuccgagucCGCggcggccgaggcgGCGAAGACGCCGa -3'
miRNA:   3'- ccaCGGCCCCu-------GUG-------------UGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21149 0.67 0.798745
Target:  5'- uGGUGUCGccGGCGCGCagcucgcggaGGAGGCGCUGg -3'
miRNA:   3'- -CCACGGCccCUGUGUG----------CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21168 0.77 0.291796
Target:  5'- cGUGCCGcGGGACgccgaggcGCGCGucGugGCCGa -3'
miRNA:   3'- cCACGGC-CCCUG--------UGUGCuuCugCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.