miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 21364 0.67 0.807369
Target:  5'- cGGaaCCGGGcguaGACGCGCGAGcuccGCGCCGc -3'
miRNA:   3'- -CCacGGCCC----CUGUGUGCUUc---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21970 0.67 0.789981
Target:  5'- uGGUGCUcgcgcggggagGGGGGCAgGgCcAGGAUGCCGc -3'
miRNA:   3'- -CCACGG-----------CCCCUGUgU-GcUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22126 0.68 0.753669
Target:  5'- ---uCCGGGGGCACGCGcgcaacAGGCGCa- -3'
miRNA:   3'- ccacGGCCCCUGUGUGCu-----UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 22172 0.66 0.863156
Target:  5'- cGGcGCCGuGcGGAUcgGCGGAG-CGCCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGugUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22906 0.75 0.355789
Target:  5'- aGGUGCgCGGGGGCGuggccgcgccccCGCGccuGGACGCCc -3'
miRNA:   3'- -CCACG-GCCCCUGU------------GUGCu--UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 22969 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23021 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23039 0.68 0.762919
Target:  5'- --cGCCGGcaGGACGCcgcCGAGcucGACGCCGc -3'
miRNA:   3'- ccaCGGCC--CCUGUGu--GCUU---CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 23073 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23125 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23177 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23229 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23281 0.68 0.753669
Target:  5'- gGGUGCgCGGGGGaggggaGgGCGAGGgguGCGCgGg -3'
miRNA:   3'- -CCACG-GCCCCUg-----UgUGCUUC---UGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 23494 0.75 0.355789
Target:  5'- gGGUGUgCGGcGGGCcggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCACG-GCC-CCUG---UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 23520 0.73 0.491752
Target:  5'- gGGUGCUGcuGGGGCccCACGucGGCGCCa -3'
miRNA:   3'- -CCACGGC--CCCUGu-GUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 23636 0.66 0.868961
Target:  5'- --cGCCGGGGcGCGCgguccccGCGGAGGCGaggggcggcguccCCGg -3'
miRNA:   3'- ccaCGGCCCC-UGUG-------UGCUUCUGC-------------GGC- -5'
21547 3' -58.3 NC_004812.1 + 24949 0.73 0.467934
Target:  5'- cGGUGgaGGGGACACuccgggaaguggcucGCGAGGACGUa- -3'
miRNA:   3'- -CCACggCCCCUGUG---------------UGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 25018 0.71 0.597607
Target:  5'- gGGUGgCGGGGGUugGCGAAGAUggGCUc -3'
miRNA:   3'- -CCACgGCCCCUGugUGCUUCUG--CGGc -5'
21547 3' -58.3 NC_004812.1 + 25286 0.67 0.824161
Target:  5'- cGG-GCCGGGcGaucgaGCGgACGAAGGC-CCGg -3'
miRNA:   3'- -CCaCGGCCC-C-----UGUgUGCUUCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 25465 0.73 0.464322
Target:  5'- uGGUgGUCGcGcGGGCACACGAGGAUGUCc -3'
miRNA:   3'- -CCA-CGGC-C-CCUGUGUGCUUCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.