miRNA display CGI


Results 121 - 140 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 25579 0.67 0.815843
Target:  5'- --cGaCGGGGAgGacgGCGggGACGCCu -3'
miRNA:   3'- ccaCgGCCCCUgUg--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 25914 0.67 0.824161
Target:  5'- --cGCCGcGGGCGCGCGucgcGAGA-GCCGg -3'
miRNA:   3'- ccaCGGCcCCUGUGUGC----UUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 26046 0.7 0.657024
Target:  5'- cGGgGCCGGGGGCGCgGCGcccucgcGCGCCc -3'
miRNA:   3'- -CCaCGGCCCCUGUG-UGCuuc----UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 26429 0.7 0.657024
Target:  5'- --cGCCGGaGGugG-ACGAGGcGCGCCGg -3'
miRNA:   3'- ccaCGGCC-CCugUgUGCUUC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 26487 0.68 0.752739
Target:  5'- cGG-GCgGGGGACGaucggucCGCGggGGuCGUCGu -3'
miRNA:   3'- -CCaCGgCCCCUGU-------GUGCuuCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 26728 0.68 0.753669
Target:  5'- --gGCUGGGGccugGCGCACGccGcCGCCGc -3'
miRNA:   3'- ccaCGGCCCC----UGUGUGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 26963 0.68 0.744319
Target:  5'- cGUGCCccaGGGGGCGCcccGCGAAcucGGCGCg- -3'
miRNA:   3'- cCACGG---CCCCUGUG---UGCUU---CUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 27020 0.69 0.696355
Target:  5'- --cGCCGGGGcCGCgggggaggACGAGGACGaCGa -3'
miRNA:   3'- ccaCGGCCCCuGUG--------UGCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 27296 0.7 0.647124
Target:  5'- --cGCCGGcGGCGC-CGAGGcCGCCGu -3'
miRNA:   3'- ccaCGGCCcCUGUGuGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 27691 0.72 0.501062
Target:  5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 28671 0.68 0.772059
Target:  5'- uGGcgGCCGGGGACGCGCuucgcgUGCCc -3'
miRNA:   3'- -CCa-CGGCCCCUGUGUGcuucu-GCGGc -5'
21547 3' -58.3 NC_004812.1 + 28691 0.67 0.798745
Target:  5'- --cGCUGGGGGCugGCc---GCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGugUGcuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 28896 0.69 0.693426
Target:  5'- cGG-GCCGcGGcGACACgcugcucgccgacgACGAcGACGCCGc -3'
miRNA:   3'- -CCaCGGC-CC-CUGUG--------------UGCUuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 29206 0.69 0.716713
Target:  5'- cGGUGCacgugugguuuauugGGGGGCGgGCGggGGuCGCgGa -3'
miRNA:   3'- -CCACGg--------------CCCCUGUgUGCuuCU-GCGgC- -5'
21547 3' -58.3 NC_004812.1 + 29348 0.72 0.519908
Target:  5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3'
miRNA:   3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 29610 0.69 0.69733
Target:  5'- cGG-GCCGGccGGCGCuccgccgccgcccgcCGAGGACGCCGg -3'
miRNA:   3'- -CCaCGGCCc-CUGUGu--------------GCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 29745 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 29953 0.67 0.821682
Target:  5'- cGGcGUCGacGGGGCGCGCGAacagcagcugccggAGGCuGCCGu -3'
miRNA:   3'- -CCaCGGC--CCCUGUGUGCU--------------UCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 30076 0.69 0.71575
Target:  5'- cGGgcgGCCGGGcccuCGCGggGGCGCgGc -3'
miRNA:   3'- -CCa--CGGCCCcuguGUGCuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 30111 0.66 0.868243
Target:  5'- uGGgGCUGcGGGGCGCACGucccgcagcccccgGGGugGuuGg -3'
miRNA:   3'- -CCaCGGC-CCCUGUGUGC--------------UUCugCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.