miRNA display CGI


Results 141 - 160 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 30184 0.66 0.855725
Target:  5'- cGG-GCUcGGcGCGCGCGAGGGCGUgGg -3'
miRNA:   3'- -CCaCGGcCCcUGUGUGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 30220 0.68 0.772059
Target:  5'- uGGgggGUgGGGGGCGCGCGcGGGCGg-- -3'
miRNA:   3'- -CCa--CGgCCCCUGUGUGCuUCUGCggc -5'
21547 3' -58.3 NC_004812.1 + 30254 0.69 0.696355
Target:  5'- --gGCCgcGGGGACACGCGcggggcccuccGGGCGUCGg -3'
miRNA:   3'- ccaCGG--CCCCUGUGUGCu----------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30391 0.67 0.815843
Target:  5'- cGGgGCCGGcgcccGGGCugccGCGcCGAGGAgGCCGg -3'
miRNA:   3'- -CCaCGGCC-----CCUG----UGU-GCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30522 0.71 0.59662
Target:  5'- cGGgGCCGGGGGCcgcgcCGCGGgacgggcGGGCGUCGc -3'
miRNA:   3'- -CCaCGGCCCCUGu----GUGCU-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30532 0.75 0.371287
Target:  5'- aGGcGCCgGGGGGCAgGCGcAGGGCGCgCGg -3'
miRNA:   3'- -CCaCGG-CCCCUGUgUGC-UUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 30600 0.69 0.686578
Target:  5'- --cGCCGGGGGuCGgGCGGcgGGAcCGCCa -3'
miRNA:   3'- ccaCGGCCCCU-GUgUGCU--UCU-GCGGc -5'
21547 3' -58.3 NC_004812.1 + 30631 0.66 0.832315
Target:  5'- cGG-GCCGcGcGGACGCGgGGcgcgGGACGCgCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGUGUgCU----UCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 30805 0.66 0.848103
Target:  5'- aGGgaggGCgGGGGACGg--GAGGGgGCCGa -3'
miRNA:   3'- -CCa---CGgCCCCUGUgugCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30811 0.68 0.734877
Target:  5'- aGG-GCCccacGGGGGgGCAgGgcGGCGCCa -3'
miRNA:   3'- -CCaCGG----CCCCUgUGUgCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 30846 0.67 0.824161
Target:  5'- --cGcCCGGGGGCGCGCccggccauGGGGgGCCGa -3'
miRNA:   3'- ccaC-GGCCCCUGUGUGc-------UUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 30885 0.67 0.815843
Target:  5'- cGGggGCCGGGGcUGCGCGAcccGGGC-CCu -3'
miRNA:   3'- -CCa-CGGCCCCuGUGUGCU---UCUGcGGc -5'
21547 3' -58.3 NC_004812.1 + 30949 0.67 0.824161
Target:  5'- cGG-GCCGcGGGCGCgGCGGcgcGGCGCCa -3'
miRNA:   3'- -CCaCGGCcCCUGUG-UGCUu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 30999 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31004 0.74 0.420466
Target:  5'- --cGCCGGGGAagacCACGAGGGCgugcaGCCGg -3'
miRNA:   3'- ccaCGGCCCCUgu--GUGCUUCUG-----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 31486 0.66 0.855725
Target:  5'- -aUGCgGGGGGCcccCugGAGGGCGgCu -3'
miRNA:   3'- ccACGgCCCCUGu--GugCUUCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 31663 0.76 0.340752
Target:  5'- aGG-GCCGGGGACAgcCGCuGggGGCGCa- -3'
miRNA:   3'- -CCaCGGCCCCUGU--GUG-CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 31721 0.69 0.676758
Target:  5'- --gGCCGGGGGucCugGgggucCGggGugGCCGg -3'
miRNA:   3'- ccaCGGCCCCU--GugU-----GCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31786 0.7 0.637214
Target:  5'- gGGUcGCCGGGGGuC-CugGggGuccgggguCGCCGg -3'
miRNA:   3'- -CCA-CGGCCCCU-GuGugCuuCu-------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31828 0.75 0.371287
Target:  5'- uGGUGCCGcGGGACcaGCGAGaccgaGCGCCGg -3'
miRNA:   3'- -CCACGGC-CCCUGugUGCUUc----UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.