miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 154714 0.69 0.716713
Target:  5'- cGGUGCacgugugguuuauugGGGGGCGgGCGggGGuCGCgGa -3'
miRNA:   3'- -CCACGg--------------CCCCUGUgUGCuuCU-GCGgC- -5'
21547 3' -58.3 NC_004812.1 + 154404 0.69 0.693426
Target:  5'- cGG-GCCGcGGcGACACgcugcucgccgacgACGAcGACGCCGc -3'
miRNA:   3'- -CCaCGGC-CC-CUGUG--------------UGCUuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 154199 0.67 0.798745
Target:  5'- --cGCUGGGGGCugGCc---GCGCCGc -3'
miRNA:   3'- ccaCGGCCCCUGugUGcuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 154019 0.67 0.781083
Target:  5'- cGGUGCCGucGGCG-GCGgcGGCGUCGg -3'
miRNA:   3'- -CCACGGCccCUGUgUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 153743 0.7 0.647124
Target:  5'- cGGUGCCGGcG-CGCACGgcGuccucggcgucGCGCCGc -3'
miRNA:   3'- -CCACGGCCcCuGUGUGCuuC-----------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 153446 0.71 0.577919
Target:  5'- cGGggGCgGGGGGCGCGgGggGGgGCgGa -3'
miRNA:   3'- -CCa-CGgCCCCUGUGUgCuuCUgCGgC- -5'
21547 3' -58.3 NC_004812.1 + 153356 0.69 0.686578
Target:  5'- gGGcGgCGGGGGCGCggGCGccccuggcGGGCGCCGg -3'
miRNA:   3'- -CCaCgGCCCCUGUG--UGCu-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 153203 0.66 0.863156
Target:  5'- aGGgccGCCGGGGGgAgGCGGgcggcgAGuCGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUgUgUGCU------UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 153199 0.72 0.501062
Target:  5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 153163 0.75 0.348213
Target:  5'- cGGgggGCCacGGGGACcacgggggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCa--CGG--CCCCUG--------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152915 0.68 0.762919
Target:  5'- gGGcGCCGGgcgggacuuGGGCGCcggGCGGgacuuGGGCGCCGg -3'
miRNA:   3'- -CCaCGGCC---------CCUGUG---UGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152804 0.7 0.647124
Target:  5'- --cGCCGGcGGCGC-CGAGGcCGCCGu -3'
miRNA:   3'- ccaCGGCCcCUGUGuGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152709 0.69 0.71575
Target:  5'- cGUGgCGGGGGCGgccuCGGAGGCggagGCCGg -3'
miRNA:   3'- cCACgGCCCCUGUgu--GCUUCUG----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 152674 0.71 0.577919
Target:  5'- gGGaGgCGGGGGCA-GCGAGGGCGCUu -3'
miRNA:   3'- -CCaCgGCCCCUGUgUGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 152632 0.81 0.165311
Target:  5'- aGGUGcCCGGGccGGCGCGCGGcggggGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCC--CUGUGUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152583 0.66 0.855725
Target:  5'- --cGgCGGGcGGCGCGaGAGGACGCgGa -3'
miRNA:   3'- ccaCgGCCC-CUGUGUgCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 152529 0.69 0.696355
Target:  5'- --cGCCGGGGcCGCgggggaggACGAGGACGaCGa -3'
miRNA:   3'- ccaCGGCCCCuGUG--------UGCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 152409 0.76 0.333408
Target:  5'- uGGgGCCGGGcGC-CGCGggGGCGCCc -3'
miRNA:   3'- -CCaCGGCCCcUGuGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 152236 0.68 0.753669
Target:  5'- --gGCUGGGGccugGCGCACGccGcCGCCGc -3'
miRNA:   3'- ccaCGGCCCC----UGUGUGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152212 0.67 0.824161
Target:  5'- aGUGCgGcGGGAcCACcCGGGcGACGCCu -3'
miRNA:   3'- cCACGgC-CCCU-GUGuGCUU-CUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.