miRNA display CGI


Results 61 - 80 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 147746 0.67 0.824161
Target:  5'- gGGU-CCGcGGGACGCGgGGcucccgcgGGACGCgGg -3'
miRNA:   3'- -CCAcGGC-CCCUGUGUgCU--------UCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 145844 0.67 0.813317
Target:  5'- cGG-GcCCGGGGACggagucucgcgcagGCGCGucGcCGCCGu -3'
miRNA:   3'- -CCaC-GGCCCCUG--------------UGUGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 145748 0.7 0.656034
Target:  5'- cGG-GUCGGGGGgcucgucggucguCGCGCGggGGggUGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU-------------GUGUGCuuCU--GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 145558 0.66 0.863156
Target:  5'- uGGUcCCGGGGucggGCGCcacCGgcGGCGCCc -3'
miRNA:   3'- -CCAcGGCCCC----UGUGu--GCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 144350 0.66 0.832314
Target:  5'- aGGUGCU--GGACACGgugGucGACGCCGa -3'
miRNA:   3'- -CCACGGccCCUGUGUg--CuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 144069 0.73 0.491752
Target:  5'- --cGCCGGGGGcCugGCGGAGcUGCUGg -3'
miRNA:   3'- ccaCGGCCCCU-GugUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 143872 0.68 0.772059
Target:  5'- -cUGuUCGGGGAgGCGuucgaGggGGCGCCGu -3'
miRNA:   3'- ccAC-GGCCCCUgUGUg----CuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 143718 0.69 0.696355
Target:  5'- ---cCCGGGGGCAC-CGA--GCGCCGc -3'
miRNA:   3'- ccacGGCCCCUGUGuGCUucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 143676 0.68 0.762919
Target:  5'- --cGCUGGGGGCucGgGCGAcGGACGCgGa -3'
miRNA:   3'- ccaCGGCCCCUG--UgUGCU-UCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 143516 0.71 0.59662
Target:  5'- cGG-GCCcGGGcguacgaGCGCAUGggGGCGCUGa -3'
miRNA:   3'- -CCaCGGcCCC-------UGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 142400 0.77 0.291796
Target:  5'- --cGCCGGGGGCGgGgcCGAGGACgGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUgU--GCUUCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 142156 0.68 0.744319
Target:  5'- uGGUGaCCGGGGcgACGCGGAucgcGGCGCa- -3'
miRNA:   3'- -CCAC-GGCCCCugUGUGCUU----CUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 142014 0.67 0.798745
Target:  5'- uGGUuCCGGGacguGGcCGCGCuGGAGACGCCc -3'
miRNA:   3'- -CCAcGGCCC----CU-GUGUG-CUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 141939 0.75 0.379207
Target:  5'- --gGCCgcGGGGugGCACGGcccgaAGGCGCCGu -3'
miRNA:   3'- ccaCGG--CCCCugUGUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 141789 0.68 0.752739
Target:  5'- --cGCgCGGGGGggcgggcCGCGCGggGGUGCCGc -3'
miRNA:   3'- ccaCG-GCCCCU-------GUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 140997 0.72 0.510448
Target:  5'- --aGCCGGGGGC-CACGcAGGgGCCc -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 140889 0.72 0.545774
Target:  5'- gGGUGgC-GGGACGCGCGggGGCaucugcccguaccuGCCGc -3'
miRNA:   3'- -CCACgGcCCCUGUGUGCuuCUG--------------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 140860 0.67 0.798745
Target:  5'- cGUGCCGcaGGCGCGC-AAGGCGCgGg -3'
miRNA:   3'- cCACGGCccCUGUGUGcUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 140631 0.68 0.734877
Target:  5'- cGGUGCUGuaGACgcgccgccGCGCGgcGGCGCCa -3'
miRNA:   3'- -CCACGGCccCUG--------UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 140622 0.66 0.870393
Target:  5'- --gGCgCGGGGcCGCGgGGucGGCGCCGc -3'
miRNA:   3'- ccaCG-GCCCCuGUGUgCUu-CUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.