miRNA display CGI


Results 81 - 100 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 140569 0.7 0.636223
Target:  5'- cGGUGaUCGGGGGCcucugcGCGCuGAcccuggccgccauGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCCCUG------UGUG-CU-------------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 139956 0.76 0.31907
Target:  5'- cGGgggGCCGGGaGCGCGCGGcguggcGGACGUCGg -3'
miRNA:   3'- -CCa--CGGCCCcUGUGUGCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 139526 0.67 0.824161
Target:  5'- aGGggGgCGGGGACAgcgcCACGggGgGCGCg- -3'
miRNA:   3'- -CCa-CgGCCCCUGU----GUGCuuC-UGCGgc -5'
21547 3' -58.3 NC_004812.1 + 139079 0.66 0.863156
Target:  5'- aGGcugGCCcuGGGuuGCACGggGA-GCCGa -3'
miRNA:   3'- -CCa--CGGc-CCCugUGUGCuuCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138455 0.7 0.637214
Target:  5'- aGGUGguaCGGGGGCuguCGgGGcgGGGCGCCGc -3'
miRNA:   3'- -CCACg--GCCCCUGu--GUgCU--UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138411 0.78 0.266381
Target:  5'- aGUaCUGGGGGguCGCGGAGACGCCGu -3'
miRNA:   3'- cCAcGGCCCCUguGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138365 0.75 0.387239
Target:  5'- cGGUuCCGcGGGACGgGCGggGGCGCg- -3'
miRNA:   3'- -CCAcGGC-CCCUGUgUGCuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 137950 0.66 0.837921
Target:  5'- gGGcGCCGuGGACAUggccgucugcggagACGggGGCgGCCGc -3'
miRNA:   3'- -CCaCGGCcCCUGUG--------------UGCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 137865 0.67 0.813317
Target:  5'- -cUGCCGGGcccucaccuucgauGGCGCGCGgcGccccaGCGCCGc -3'
miRNA:   3'- ccACGGCCC--------------CUGUGUGCuuC-----UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137850 0.7 0.657024
Target:  5'- uGGcGCUGGcGACGgACGAGGuGCGCCGc -3'
miRNA:   3'- -CCaCGGCCcCUGUgUGCUUC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137786 0.72 0.529435
Target:  5'- cGGUGgCGGGaucuGGCGggcgGCGAGGGCGCCGc -3'
miRNA:   3'- -CCACgGCCC----CUGUg---UGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137583 0.74 0.395383
Target:  5'- --cGUCGGuGGACAUAUGGAG-CGCCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137414 0.66 0.866075
Target:  5'- cGUGCUGGGuuuuccgggaugggcGACGCugaagguuucUGggGGCGCCGc -3'
miRNA:   3'- cCACGGCCC---------------CUGUGu---------GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137055 0.68 0.740553
Target:  5'- uGGUgGCCGGccuGGGCuuCGCGAuccaccgcgcccuGACGCCGg -3'
miRNA:   3'- -CCA-CGGCC---CCUGu-GUGCUu------------CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 136596 0.66 0.832315
Target:  5'- -uUGCCGcGacGCGCGCGGAGACGgCGc -3'
miRNA:   3'- ccACGGC-CccUGUGUGCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 136469 0.68 0.753669
Target:  5'- --cGCgCGGGGGCGcCAUGGGcGACGCgGg -3'
miRNA:   3'- ccaCG-GCCCCUGU-GUGCUU-CUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 135076 0.66 0.863156
Target:  5'- cGG-GgCGGGGGCGCGCucGGAGcccgucuucACGCCc -3'
miRNA:   3'- -CCaCgGCCCCUGUGUG--CUUC---------UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 134055 0.7 0.660978
Target:  5'- cGGcagGCCGacGGGCcggugucguuucccgACGCGggGGCGCCGa -3'
miRNA:   3'- -CCa--CGGCc-CCUG---------------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 133983 0.69 0.666904
Target:  5'- gGGUgGCgGGGGGCAUguauuuuaucgACGAcGAgGCCGa -3'
miRNA:   3'- -CCA-CGgCCCCUGUG-----------UGCUuCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 133920 0.69 0.666904
Target:  5'- cGG-GCgGGGGGgACGCGggGucCGCuCGg -3'
miRNA:   3'- -CCaCGgCCCCUgUGUGCuuCu-GCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.