miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 133250 0.85 0.088003
Target:  5'- cGGcgGCCGGGGcgguGCACAgGAGGGCGCCGa -3'
miRNA:   3'- -CCa-CGGCCCC----UGUGUgCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 133179 0.66 0.863156
Target:  5'- --gGCCGccaGGCACACcAGGACGCCa -3'
miRNA:   3'- ccaCGGCcc-CUGUGUGcUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 133069 0.68 0.753669
Target:  5'- -aUGCCGGcGGCG-GCGAuGGCGCCGa -3'
miRNA:   3'- ccACGGCCcCUGUgUGCUuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 132947 0.68 0.760155
Target:  5'- aGGcGaCCGGGGACGCcgccccucgccuccGCGggGAcCGCgCGc -3'
miRNA:   3'- -CCaC-GGCCCCUGUG--------------UGCuuCU-GCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 132620 0.68 0.772059
Target:  5'- --gGCCGGGGGCgguGCugGAugcGGGCGUa- -3'
miRNA:   3'- ccaCGGCCCCUG---UGugCU---UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 132566 0.68 0.772059
Target:  5'- --gGCCGGGGGCgguGCugGAugcGGGCGUa- -3'
miRNA:   3'- ccaCGGCCCCUG---UGugCU---UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 132026 0.66 0.848103
Target:  5'- --cGCCGuGGA-GCugGAcucGGACGCCGg -3'
miRNA:   3'- ccaCGGCcCCUgUGugCU---UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 131514 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 131174 0.67 0.781083
Target:  5'- --cGCCGGGGGgcgucggaguccUGCGCGA--ACGCCGc -3'
miRNA:   3'- ccaCGGCCCCU------------GUGUGCUucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130994 0.71 0.587748
Target:  5'- --gGCgCGGGGACACGgCGgcGGCGgCGg -3'
miRNA:   3'- ccaCG-GCCCCUGUGU-GCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 130905 0.72 0.501062
Target:  5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 130854 0.71 0.568127
Target:  5'- cGGgGUCGGcGGGgGCGCGgcGGCGUCGa -3'
miRNA:   3'- -CCaCGGCC-CCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130717 0.66 0.863156
Target:  5'- cGGcGCUGGgcgcGGGCGcCGCGGAGG-GCCGg -3'
miRNA:   3'- -CCaCGGCC----CCUGU-GUGCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130549 0.98 0.012798
Target:  5'- cGG-GCCGGGGGCGCGCGAGGGCGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130444 0.68 0.762919
Target:  5'- --cGCgGaGGcGGCGCugGAGGGCgGCCGg -3'
miRNA:   3'- ccaCGgC-CC-CUGUGugCUUCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 130256 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129736 0.72 0.510448
Target:  5'- cGG-GCCGGGGGCG-GCGgcGGCGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 129708 0.68 0.762919
Target:  5'- aGGUGCUgcuggagguGGuGGugAgCGCGuacGGACGCCGa -3'
miRNA:   3'- -CCACGG---------CC-CCugU-GUGCu--UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129522 0.66 0.840297
Target:  5'- aGG-GCCccGGGACGCugGAc-AUGCCGg -3'
miRNA:   3'- -CCaCGGc-CCCUGUGugCUucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129427 0.66 0.832314
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.