miRNA display CGI


Results 121 - 140 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 129226 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 129140 0.73 0.446485
Target:  5'- --cGCCGGcGGGCGCGCGgcGcCGCCc -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCuuCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 129077 0.71 0.558377
Target:  5'- --cGCCGGcGGGCAgGCGgcGGCGgCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 128180 0.72 0.547707
Target:  5'- --cGCaGGcGGccucgacGCGCGCGAAGACGCCGg -3'
miRNA:   3'- ccaCGgCC-CC-------UGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 128109 0.68 0.772059
Target:  5'- cGUGCgCGcGcGGuaGCGCACGuuGGCGCCGc -3'
miRNA:   3'- cCACG-GC-C-CC--UGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 127556 0.69 0.696355
Target:  5'- cGGcgGCgGGGGGCGCGggggaGggGGCGCg- -3'
miRNA:   3'- -CCa-CGgCCCCUGUGUg----CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 127508 0.69 0.706082
Target:  5'- gGGUcccGCCGGcGGuCGCuCGggG-CGCCGa -3'
miRNA:   3'- -CCA---CGGCC-CCuGUGuGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 126945 0.77 0.291138
Target:  5'- aGGgGCCGGGGccgcgagggccggGCACgGCGgcGACGCCGg -3'
miRNA:   3'- -CCaCGGCCCC-------------UGUG-UGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 126733 0.66 0.855725
Target:  5'- aGGUgGUCGGGGGaagcgggGCGCGGAGAgGauCCGg -3'
miRNA:   3'- -CCA-CGGCCCCUg------UGUGCUUCUgC--GGC- -5'
21547 3' -58.3 NC_004812.1 + 126522 0.7 0.6273
Target:  5'- --gGCCGGGGccGCGCccccGCGAGGGC-CCGg -3'
miRNA:   3'- ccaCGGCCCC--UGUG----UGCUUCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 126395 0.67 0.789981
Target:  5'- -cUGCUGGGcGAUGgACGA-GGCGCUGg -3'
miRNA:   3'- ccACGGCCC-CUGUgUGCUuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 125715 0.69 0.696355
Target:  5'- aGGUGCCcgcggggcgcGGGGcCGCGCGcuGAGcCGCCc -3'
miRNA:   3'- -CCACGG----------CCCCuGUGUGC--UUCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 125349 0.67 0.824161
Target:  5'- --cGCCGGGcGACgaccucccgGCGCGcuuugccGACGCCGa -3'
miRNA:   3'- ccaCGGCCC-CUG---------UGUGCuu-----CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 125332 0.7 0.657024
Target:  5'- gGGcGCCGcGGGAUGCGcCGgcGGCgGCCGa -3'
miRNA:   3'- -CCaCGGC-CCCUGUGU-GCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 125278 0.68 0.744319
Target:  5'- --cGgCGGGcGCGCGCGAGaGCGCCGc -3'
miRNA:   3'- ccaCgGCCCcUGUGUGCUUcUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 125091 0.67 0.789981
Target:  5'- cGUGCCuccGGGCGCugGGGaGCGCCa -3'
miRNA:   3'- cCACGGcc-CCUGUGugCUUcUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 125027 0.69 0.676758
Target:  5'- cGGacCCGGGGACGCGCuccccucGCGCCGc -3'
miRNA:   3'- -CCacGGCCCCUGUGUGcuuc---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 124989 0.7 0.647124
Target:  5'- --cGCCGGcGAC-CGCGccGGCGCCGa -3'
miRNA:   3'- ccaCGGCCcCUGuGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 124910 0.68 0.725351
Target:  5'- --gGCCGGGcGGCG-GCGggGGCGgCGg -3'
miRNA:   3'- ccaCGGCCC-CUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 124851 0.66 0.855725
Target:  5'- cGGUGgCGuGGGGCGgGCGcc-GCGCCc -3'
miRNA:   3'- -CCACgGC-CCCUGUgUGCuucUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.