miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 83732 0.78 0.258515
Target:  5'- -cUGCCGGGGACGCGgGcccggcugccgccaGGGACGCCa -3'
miRNA:   3'- ccACGGCCCCUGUGUgC--------------UUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98433 0.78 0.254359
Target:  5'- cGGcgGCCGcGGGGCggcagGCGCGggGGCGCCc -3'
miRNA:   3'- -CCa-CGGC-CCCUG-----UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 8245 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 64090 0.79 0.220957
Target:  5'- -aUGCCGGGGGCGaagagGCgGGAGACGCCGc -3'
miRNA:   3'- ccACGGCCCCUGUg----UG-CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 121731 0.82 0.149755
Target:  5'- aGGUGcCCGGGccGGCGCGCGGcgggGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCC--CUGUGUGCU----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31663 0.76 0.340752
Target:  5'- aGG-GCCGGGGACAgcCGCuGggGGCGCa- -3'
miRNA:   3'- -CCaCGGCCCCUGU--GUG-CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 122262 0.75 0.348213
Target:  5'- cGGgggGCCacGGGGACcacgggggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCa--CGG--CCCCUG--------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 57580 0.74 0.395383
Target:  5'- --aGCCGagacGGGGCGCGCGAGGccCGCCGa -3'
miRNA:   3'- ccaCGGC----CCCUGUGUGCUUCu-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138365 0.75 0.387239
Target:  5'- cGGUuCCGcGGGACGgGCGggGGCGCg- -3'
miRNA:   3'- -CCAcGGC-CCCUGUgUGCuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 100279 0.75 0.387239
Target:  5'- cGG-GcCCGGGGGCcgaGCACGGAcGCGCCGc -3'
miRNA:   3'- -CCaC-GGCCCCUG---UGUGCUUcUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 12127 0.75 0.379207
Target:  5'- gGGgggGuuGGGGGCGCGCG---GCGCCGg -3'
miRNA:   3'- -CCa--CggCCCCUGUGUGCuucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 141939 0.75 0.379207
Target:  5'- --gGCCgcGGGGugGCACGGcccgaAGGCGCCGu -3'
miRNA:   3'- ccaCGG--CCCCugUGUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 72053 0.75 0.371287
Target:  5'- cGGgggGUCGGGGGCGCugGggG-CGgCGg -3'
miRNA:   3'- -CCa--CGGCCCCUGUGugCuuCuGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 30532 0.75 0.371287
Target:  5'- aGGcGCCgGGGGGCAgGCGcAGGGCGCgCGg -3'
miRNA:   3'- -CCaCGG-CCCCUGUgUGC-UUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 102945 0.75 0.371287
Target:  5'- --cGCgGGGGugGCGgGggGGCGUCGg -3'
miRNA:   3'- ccaCGgCCCCugUGUgCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31828 0.75 0.371287
Target:  5'- uGGUGCCGcGGGACcaGCGAGaccgaGCGCCGg -3'
miRNA:   3'- -CCACGGC-CCCUGugUGCUUc----UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 121020 0.75 0.355789
Target:  5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 114682 0.75 0.355789
Target:  5'- cGGUGCCGGGcGCGCcCGggGcCGCgGg -3'
miRNA:   3'- -CCACGGCCCcUGUGuGCuuCuGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 149002 0.75 0.355789
Target:  5'- gGGUGUgCGGcGGGCcggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCACG-GCC-CCUG---UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22906 0.75 0.355789
Target:  5'- aGGUGCgCGGGGGCGuggccgcgccccCGCGccuGGACGCCc -3'
miRNA:   3'- -CCACG-GCCCCUGU------------GUGCu--UCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.