miRNA display CGI


Results 81 - 100 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 98 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156508 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 11594 0.73 0.454465
Target:  5'- --cGCCGGGGACACGgCGGgcGGGCucggcguGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUGU-GCU--UCUG-------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 19762 0.73 0.455357
Target:  5'- cGGUGCgGGGGuccCAgGCGAcGcGCGCCGg -3'
miRNA:   3'- -CCACGgCCCCu--GUgUGCUuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 109317 0.73 0.455357
Target:  5'- --cGCCGGcGGCGCugGAGGcgGCGCCGc -3'
miRNA:   3'- ccaCGGCCcCUGUGugCUUC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 25465 0.73 0.464322
Target:  5'- uGGUgGUCGcGcGGGCACACGAGGAUGUCc -3'
miRNA:   3'- -CCA-CGGC-C-CCUGUGUGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 44789 0.73 0.464322
Target:  5'- cGGcGgCGGGGACGaccaacaccucCGCGggGGCGCUGu -3'
miRNA:   3'- -CCaCgGCCCCUGU-----------GUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 7735 0.73 0.446485
Target:  5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3'
miRNA:   3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 68220 0.74 0.437712
Target:  5'- cGGccgGCCGGGGGUGCGCGggGGCcgggGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUGUGUGCuuCUG----CGGc -5'
21547 3' -58.3 NC_004812.1 + 96460 0.74 0.43684
Target:  5'- uGGcUGCUGGGGGCcgacccggcccccGCG-GAGGACGCCGc -3'
miRNA:   3'- -CC-ACGGCCCCUG-------------UGUgCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138365 0.75 0.387239
Target:  5'- cGGUuCCGcGGGACGgGCGggGGCGCg- -3'
miRNA:   3'- -CCAcGGC-CCCUGUgUGCuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 57580 0.74 0.395383
Target:  5'- --aGCCGagacGGGGCGCGCGAGGccCGCCGa -3'
miRNA:   3'- ccaCGGC----CCCUGUGUGCUUCu-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 137583 0.74 0.395383
Target:  5'- --cGUCGGuGGACAUAUGGAG-CGCCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 99218 0.74 0.403636
Target:  5'- aGGUGCCGGGcGaACGCgucgGCGggGGCggggGCCGu -3'
miRNA:   3'- -CCACGGCCC-C-UGUG----UGCuuCUG----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 155253 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 8392 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 31004 0.74 0.420466
Target:  5'- --cGCCGGGGAagacCACGAGGGCgugcaGCCGg -3'
miRNA:   3'- ccaCGGCCCCUgu--GUGCUUCUG-----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 36170 0.74 0.429038
Target:  5'- gGGUGCgCGGGGucGCuCugGGAGugGUCGu -3'
miRNA:   3'- -CCACG-GCCCC--UGuGugCUUCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 105302 0.74 0.432495
Target:  5'- cGGUGCCGuGGGGC-UugGGuuuggguaaccgccgGGACGCCa -3'
miRNA:   3'- -CCACGGC-CCCUGuGugCU---------------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 24949 0.73 0.467934
Target:  5'- cGGUGgaGGGGACACuccgggaaguggcucGCGAGGACGUa- -3'
miRNA:   3'- -CCACggCCCCUGUG---------------UGCUUCUGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.