miRNA display CGI


Results 101 - 120 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 130905 0.72 0.501062
Target:  5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 140997 0.72 0.510448
Target:  5'- --aGCCGGGGGC-CACGcAGGgGCCc -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 4349 0.72 0.510448
Target:  5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3'
miRNA:   3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 129736 0.72 0.510448
Target:  5'- cGG-GCCGGGGGCG-GCGgcGGCGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 73776 0.72 0.518959
Target:  5'- gGGUGCCcGcGGGCucCGCGAgcggggcGGGCGCCGg -3'
miRNA:   3'- -CCACGGcC-CCUGu-GUGCU-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19762 0.73 0.455357
Target:  5'- cGGUGCgGGGGuccCAgGCGAcGcGCGCCGg -3'
miRNA:   3'- -CCACGgCCCCu--GUgUGCUuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 11594 0.73 0.454465
Target:  5'- --cGCCGGGGACACGgCGGgcGGGCucggcguGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUGU-GCU--UCUG-------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 155253 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 8392 0.74 0.411998
Target:  5'- gGGU-CCGGGGGCGCGgCGggGGCucggccccgGCCGu -3'
miRNA:   3'- -CCAcGGCCCCUGUGU-GCuuCUG---------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 31004 0.74 0.420466
Target:  5'- --cGCCGGGGAagacCACGAGGGCgugcaGCCGg -3'
miRNA:   3'- ccaCGGCCCCUgu--GUGCUUCUG-----CGGC- -5'
21547 3' -58.3 NC_004812.1 + 36170 0.74 0.429038
Target:  5'- gGGUGCgCGGGGucGCuCugGGAGugGUCGu -3'
miRNA:   3'- -CCACG-GCCCC--UGuGugCUUCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 105302 0.74 0.432495
Target:  5'- cGGUGCCGuGGGGC-UugGGuuuggguaaccgccgGGACGCCa -3'
miRNA:   3'- -CCACGGC-CCCUGuGugCU---------------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 96460 0.74 0.43684
Target:  5'- uGGcUGCUGGGGGCcgacccggcccccGCG-GAGGACGCCGc -3'
miRNA:   3'- -CC-ACGGCCCCUG-------------UGUgCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 68220 0.74 0.437712
Target:  5'- cGGccgGCCGGGGGUGCGCGggGGCcgggGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUGUGUGCuuCUG----CGGc -5'
21547 3' -58.3 NC_004812.1 + 7735 0.73 0.446485
Target:  5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3'
miRNA:   3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 19154 0.73 0.446485
Target:  5'- --cGCgGGGGGCGCgGCGgcGGCGCCc -3'
miRNA:   3'- ccaCGgCCCCUGUG-UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 71141 0.73 0.446485
Target:  5'- gGGU-UCGGGGGCGCGCGAGuuCGUCGg -3'
miRNA:   3'- -CCAcGGCCCCUGUGUGCUUcuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129140 0.73 0.446485
Target:  5'- --cGCCGGcGGGCGCGCGgcGcCGCCc -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCuuCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156508 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.