miRNA display CGI


Results 121 - 140 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 101993 0.71 0.568127
Target:  5'- --cGCgGGGGGuCGCGCGAcucgcGGCGCCGc -3'
miRNA:   3'- ccaCGgCCCCU-GUGUGCUu----CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130854 0.71 0.568127
Target:  5'- cGGgGUCGGcGGGgGCGCGgcGGCGUCGa -3'
miRNA:   3'- -CCaCGGCC-CCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 153199 0.72 0.501062
Target:  5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 101876 0.72 0.501062
Target:  5'- aGGUacccCCGGGGGCGCGcCGGgcuaGGGCGCCc -3'
miRNA:   3'- -CCAc---GGCCCCUGUGU-GCU----UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 23520 0.73 0.491752
Target:  5'- gGGUGCUGcuGGGGCccCACGucGGCGCCa -3'
miRNA:   3'- -CCACGGC--CCCUGu-GUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 68220 0.74 0.437712
Target:  5'- cGGccgGCCGGGGGUGCGCGggGGCcgggGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUGUGUGCuuCUG----CGGc -5'
21547 3' -58.3 NC_004812.1 + 7735 0.73 0.446485
Target:  5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3'
miRNA:   3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 19154 0.73 0.446485
Target:  5'- --cGCgGGGGGCGCgGCGgcGGCGCCc -3'
miRNA:   3'- ccaCGgCCCCUGUG-UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 71141 0.73 0.446485
Target:  5'- gGGU-UCGGGGGCGCGCGAGuuCGUCGg -3'
miRNA:   3'- -CCAcGGCCCCUGUGUGCUUcuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129140 0.73 0.446485
Target:  5'- --cGCCGGcGGGCGCGCGgcGcCGCCc -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCuuCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156508 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155686 0.71 0.576938
Target:  5'- --cGCCGGcGGGCucggcgcGCGCGAGGGCGUgGg -3'
miRNA:   3'- ccaCGGCC-CCUG-------UGUGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 11594 0.73 0.454465
Target:  5'- --cGCCGGGGACACGgCGGgcGGGCucggcguGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUGU-GCU--UCUG-------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 19762 0.73 0.455357
Target:  5'- cGGUGCgGGGGuccCAgGCGAcGcGCGCCGg -3'
miRNA:   3'- -CCACGgCCCCu--GUgUGCUuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 109317 0.73 0.455357
Target:  5'- --cGCCGGcGGCGCugGAGGcgGCGCCGc -3'
miRNA:   3'- ccaCGGCCcCUGUGugCUUC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 25465 0.73 0.464322
Target:  5'- uGGUgGUCGcGcGGGCACACGAGGAUGUCc -3'
miRNA:   3'- -CCA-CGGC-C-CCUGUGUGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 44789 0.73 0.464322
Target:  5'- cGGcGgCGGGGACGaccaacaccucCGCGggGGCGCUGu -3'
miRNA:   3'- -CCaCgGCCCCUGU-----------GUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 24949 0.73 0.467934
Target:  5'- cGGUGgaGGGGACACuccgggaaguggcucGCGAGGACGUa- -3'
miRNA:   3'- -CCACggCCCCUGUG---------------UGCUUCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 8212 0.73 0.482523
Target:  5'- --gGCCGGGGGCcCGCGucGGACGCg- -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCu-UCUGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.