miRNA display CGI


Results 61 - 80 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 3632 0.73 0.446485
Target:  5'- --cGCCGGcGGGCGCGCGgcGcCGCCc -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCuuCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 39113 0.73 0.482523
Target:  5'- --gGCCGGGGGCcCGCGucGGACGCg- -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCu-UCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 39146 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138411 0.78 0.266381
Target:  5'- aGUaCUGGGGGguCGCGGAGACGCCGu -3'
miRNA:   3'- cCAcGGCCCCUguGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21168 0.77 0.291796
Target:  5'- cGUGCCGcGGGACgccgaggcGCGCGucGugGCCGa -3'
miRNA:   3'- cCACGGC-CCCUG--------UGUGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19670 0.76 0.32618
Target:  5'- --cGCCGGGGGC-CGCGggGACGagggcggcCCGg -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuuCUGC--------GGC- -5'
21547 3' -58.3 NC_004812.1 + 151921 0.75 0.355789
Target:  5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 82071 0.74 0.403636
Target:  5'- gGGUGCCGuGGGAgAUgaACGccGACGCCc -3'
miRNA:   3'- -CCACGGC-CCCUgUG--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 79015 0.74 0.411998
Target:  5'- --gGCCGGGGACGCccGCGAc--CGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUG--UGCUucuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 124243 0.74 0.420466
Target:  5'- cGGgccugGCgGGGGGCGCGCGcggcGGCGCCc -3'
miRNA:   3'- -CCa----CGgCCCCUGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 123891 0.71 0.587748
Target:  5'- -aUGCCGcGGGACGCGCugggGGAGGUGCUGg -3'
miRNA:   3'- ccACGGC-CCCUGUGUG----CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5486 0.71 0.587748
Target:  5'- --gGCgCGGGGACACGgCGgcGGCGgCGg -3'
miRNA:   3'- ccaCG-GCCCCUGUGU-GCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 27691 0.72 0.501062
Target:  5'- --cGCCGGGGcccagcCACACGccGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCu-----GUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 35250 0.72 0.510448
Target:  5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3'
miRNA:   3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 137786 0.72 0.529435
Target:  5'- cGGUGgCGGGaucuGGCGggcgGCGAGGGCGCCGc -3'
miRNA:   3'- -CCACgGCCC----CUGUg---UGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 117267 0.72 0.539025
Target:  5'- cGUGCUGGGGGCguucgagcgcgGCACGGccgaccAGAUGCUGc -3'
miRNA:   3'- cCACGGCCCCUG-----------UGUGCU------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 91016 0.72 0.548675
Target:  5'- cGGUGuuGaGGGGCACGCGguGACucaCCGc -3'
miRNA:   3'- -CCACggC-CCCUGUGUGCuuCUGc--GGC- -5'
21547 3' -58.3 NC_004812.1 + 115843 0.71 0.558377
Target:  5'- cGGUGCCaGGGGAacccCGCuCGggGcucccGCGCCa -3'
miRNA:   3'- -CCACGG-CCCCU----GUGuGCuuC-----UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 100865 0.71 0.568127
Target:  5'- gGGgccGCgGGGGAgGCGgggGAGGGCGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUgUGUg--CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 32114 0.71 0.577919
Target:  5'- --gGCCGGGGGCGgcgcCGCGggGGCuCCu -3'
miRNA:   3'- ccaCGGCCCCUGU----GUGCuuCUGcGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.