miRNA display CGI


Results 81 - 100 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 5397 0.72 0.501062
Target:  5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 87062 0.72 0.519908
Target:  5'- cGGcGCCGcgggcaGGGGCGCGgGggGGCgGCCGg -3'
miRNA:   3'- -CCaCGGC------CCCUGUGUgCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 101439 0.72 0.529435
Target:  5'- uGGggGCCGGGGGCgccgGCACcGAGugGgCCGu -3'
miRNA:   3'- -CCa-CGGCCCCUG----UGUGcUUCugC-GGC- -5'
21547 3' -58.3 NC_004812.1 + 19119 0.72 0.542878
Target:  5'- --cGCCGGGGuugaccaggagcccCGCGCGAAGcaggcgGCGCCGa -3'
miRNA:   3'- ccaCGGCCCCu-------------GUGUGCUUC------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 4200 0.72 0.548675
Target:  5'- cGGgaacGgCGGGGAC-CGCGgcGGCGUCGg -3'
miRNA:   3'- -CCa---CgGCCCCUGuGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 100865 0.71 0.568127
Target:  5'- gGGgccGCgGGGGAgGCGgggGAGGGCGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUgUGUg--CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 32114 0.71 0.577919
Target:  5'- --gGCCGGGGGCGgcgcCGCGggGGCuCCu -3'
miRNA:   3'- ccaCGGCCCCUGU----GUGCuuCUGcGGc -5'
21547 3' -58.3 NC_004812.1 + 124243 0.74 0.420466
Target:  5'- cGGgccugGCgGGGGGCGCGCGcggcGGCGCCc -3'
miRNA:   3'- -CCa----CGgCCCCUGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 79015 0.74 0.411998
Target:  5'- --gGCCGGGGACGCccGCGAc--CGCCGg -3'
miRNA:   3'- ccaCGGCCCCUGUG--UGCUucuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 82071 0.74 0.403636
Target:  5'- gGGUGCCGuGGGAgAUgaACGccGACGCCc -3'
miRNA:   3'- -CCACGGC-CCCUgUG--UGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 121944 0.71 0.597607
Target:  5'- --aGCUgGGGGACGCGCuGGcccuGGCGCCGg -3'
miRNA:   3'- ccaCGG-CCCCUGUGUG-CUu---CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 60104 0.7 0.61739
Target:  5'- gGGUGcCCGGGGcaggguccgccGCugGCGgcGGCGUCc -3'
miRNA:   3'- -CCAC-GGCCCC-----------UGugUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 124447 0.7 0.6273
Target:  5'- cGGUccGCgCGGGGGCGCcccgccgcgGCGggGGC-CCGg -3'
miRNA:   3'- -CCA--CG-GCCCCUGUG---------UGCuuCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 37093 0.7 0.637214
Target:  5'- cGGagGCCcGGGGCGCccgGCGGcccgcGGACGCCGc -3'
miRNA:   3'- -CCa-CGGcCCCUGUG---UGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 153743 0.7 0.647124
Target:  5'- cGGUGCCGGcG-CGCACGgcGuccucggcgucGCGCCGc -3'
miRNA:   3'- -CCACGGCCcCuGUGUGCuuC-----------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 39146 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138411 0.78 0.266381
Target:  5'- aGUaCUGGGGGguCGCGGAGACGCCGu -3'
miRNA:   3'- cCAcGGCCCCUguGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 21168 0.77 0.291796
Target:  5'- cGUGCCGcGGGACgccgaggcGCGCGucGugGCCGa -3'
miRNA:   3'- cCACGGC-CCCUG--------UGUGCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 19670 0.76 0.32618
Target:  5'- --cGCCGGGGGC-CGCGggGACGagggcggcCCGg -3'
miRNA:   3'- ccaCGGCCCCUGuGUGCuuCUGC--------GGC- -5'
21547 3' -58.3 NC_004812.1 + 151921 0.75 0.355789
Target:  5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.