Results 101 - 120 of 612 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21547 | 3' | -58.3 | NC_004812.1 | + | 31838 | 0.7 | 0.637214 |
Target: 5'- gGGUcGCCGGGGGuC-CugGggGuccgggguCGCCGg -3' miRNA: 3'- -CCA-CGGCCCCU-GuGugCuuCu-------GCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 27296 | 0.7 | 0.647124 |
Target: 5'- --cGCCGGcGGCGC-CGAGGcCGCCGu -3' miRNA: 3'- ccaCGGCCcCUGUGuGCUUCuGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 124535 | 0.7 | 0.656034 |
Target: 5'- cGGgGCCGGgccccacGGGCccCGCGAcGACGCCGa -3' miRNA: 3'- -CCaCGGCC-------CCUGu-GUGCUuCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 91202 | 0.7 | 0.657024 |
Target: 5'- cGGggGCgGGGGGCGCggcguccagcucGCGGAGcGCGUCGa -3' miRNA: 3'- -CCa-CGgCCCCUGUG------------UGCUUC-UGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 46360 | 0.7 | 0.657024 |
Target: 5'- cGUGCaccgCGGGGACuC-CGAGGuCGCCGc -3' miRNA: 3'- cCACG----GCCCCUGuGuGCUUCuGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 19119 | 0.72 | 0.542878 |
Target: 5'- --cGCCGGGGuugaccaggagcccCGCGCGAAGcaggcgGCGCCGa -3' miRNA: 3'- ccaCGGCCCCu-------------GUGUGCUUC------UGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 101439 | 0.72 | 0.529435 |
Target: 5'- uGGggGCCGGGGGCgccgGCACcGAGugGgCCGu -3' miRNA: 3'- -CCa-CGGCCCCUG----UGUGcUUCugC-GGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 39146 | 0.79 | 0.231655 |
Target: 5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3' miRNA: 3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 138411 | 0.78 | 0.266381 |
Target: 5'- aGUaCUGGGGGguCGCGGAGACGCCGu -3' miRNA: 3'- cCAcGGCCCCUguGUGCUUCUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 21168 | 0.77 | 0.291796 |
Target: 5'- cGUGCCGcGGGACgccgaggcGCGCGucGugGCCGa -3' miRNA: 3'- cCACGGC-CCCUG--------UGUGCuuCugCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 19670 | 0.76 | 0.32618 |
Target: 5'- --cGCCGGGGGC-CGCGggGACGagggcggcCCGg -3' miRNA: 3'- ccaCGGCCCCUGuGUGCuuCUGC--------GGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 151921 | 0.75 | 0.355789 |
Target: 5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3' miRNA: 3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 82071 | 0.74 | 0.403636 |
Target: 5'- gGGUGCCGuGGGAgAUgaACGccGACGCCc -3' miRNA: 3'- -CCACGGC-CCCUgUG--UGCuuCUGCGGc -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 79015 | 0.74 | 0.411998 |
Target: 5'- --gGCCGGGGACGCccGCGAc--CGCCGg -3' miRNA: 3'- ccaCGGCCCCUGUG--UGCUucuGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 124243 | 0.74 | 0.420466 |
Target: 5'- cGGgccugGCgGGGGGCGCGCGcggcGGCGCCc -3' miRNA: 3'- -CCa----CGgCCCCUGUGUGCuu--CUGCGGc -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 38636 | 0.73 | 0.446485 |
Target: 5'- --cGCCGGGcGAgGC-CGggGGCGCCc -3' miRNA: 3'- ccaCGGCCC-CUgUGuGCuuCUGCGGc -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 102055 | 0.73 | 0.455357 |
Target: 5'- uGGcgagGCCGGGGcCGCGCcGGGcGCGCCGg -3' miRNA: 3'- -CCa---CGGCCCCuGUGUGcUUC-UGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 144069 | 0.73 | 0.491752 |
Target: 5'- --cGCCGGGGGcCugGCGGAGcUGCUGg -3' miRNA: 3'- ccaCGGCCCCU-GugUGCUUCuGCGGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 5397 | 0.72 | 0.501062 |
Target: 5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3' miRNA: 3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5' |
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21547 | 3' | -58.3 | NC_004812.1 | + | 87062 | 0.72 | 0.519908 |
Target: 5'- cGGcGCCGcgggcaGGGGCGCGgGggGGCgGCCGg -3' miRNA: 3'- -CCaCGGC------CCCUGUGUgCuuCUG-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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