miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 130256 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 98389 0.66 0.863156
Target:  5'- cGGgcgGCgCGGcGGcCGCGgGgcGGCGCCGc -3'
miRNA:   3'- -CCa--CG-GCC-CCuGUGUgCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 133179 0.66 0.863156
Target:  5'- --gGCCGccaGGCACACcAGGACGCCa -3'
miRNA:   3'- ccaCGGCcc-CUGUGUGcUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 153203 0.66 0.863156
Target:  5'- aGGgccGCCGGGGGgAgGCGGgcggcgAGuCGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUgUgUGCU------UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 49501 0.66 0.863156
Target:  5'- uGGcGCUGGGGugGgACGGccucgucacACGCCGg -3'
miRNA:   3'- -CCaCGGCCCCugUgUGCUuc-------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22172 0.66 0.863156
Target:  5'- cGGcGCCGuGcGGAUcgGCGGAG-CGCCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGugUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 4748 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 60084 0.66 0.863156
Target:  5'- --gGCCGGcGGCcCGCGccagguAGGCGCCGa -3'
miRNA:   3'- ccaCGGCCcCUGuGUGCu-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130717 0.66 0.863156
Target:  5'- cGGcGCUGGgcgcGGGCGcCGCGGAGG-GCCGg -3'
miRNA:   3'- -CCaCGGCC----CCUGU-GUGCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 74060 0.66 0.863156
Target:  5'- cGGgcgGCagCGGcGGGCGCGCGcGGGcCGCCu -3'
miRNA:   3'- -CCa--CG--GCC-CCUGUGUGCuUCU-GCGGc -5'
21547 3' -58.3 NC_004812.1 + 6532 0.66 0.863156
Target:  5'- gGGgggGCgGGGGGC-CGaGggGGCuGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUGuGUgCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 139079 0.66 0.863156
Target:  5'- aGGcugGCCcuGGGuuGCACGggGA-GCCGa -3'
miRNA:   3'- -CCa--CGGc-CCCugUGUGCuuCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 17031 0.66 0.863156
Target:  5'- gGGUGaaGGGGucgGCG-GggGGCGCCu -3'
miRNA:   3'- -CCACggCCCCug-UGUgCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 123820 0.66 0.863156
Target:  5'- gGGUGCCGcGGGCGgGgCccGGGCGCCc -3'
miRNA:   3'- -CCACGGCcCCUGUgU-GcuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 48909 0.66 0.863156
Target:  5'- gGGUGCuCGcGGGcCACGCcguGGuCGCCa -3'
miRNA:   3'- -CCACG-GC-CCCuGUGUGcu-UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 154721 0.66 0.863156
Target:  5'- gGGUGCCGcGGGCGgGgCccGGGCGCCc -3'
miRNA:   3'- -CCACGGCcCCUGUgU-GcuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 122302 0.66 0.863156
Target:  5'- aGGgccGCCGGGGGgAgGCGGgcggcgAGuCGCCu -3'
miRNA:   3'- -CCa--CGGCCCCUgUgUGCU------UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 36899 0.66 0.863156
Target:  5'- aGG-GUCGGGGGgACGagGggGACgguGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUgUGUg-CuuCUG---CGGC- -5'
21547 3' -58.3 NC_004812.1 + 135076 0.66 0.863156
Target:  5'- cGG-GgCGGGGGCGCGCucGGAGcccgucuucACGCCc -3'
miRNA:   3'- -CCaCgGCCCCUGUGUG--CUUC---------UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 124051 0.66 0.863156
Target:  5'- uGUGCUgGGGGGC-CGCGGccAGcuGCGCCc -3'
miRNA:   3'- cCACGG-CCCCUGuGUGCU--UC--UGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.