miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 8517 0.66 0.938779
Target:  5'- -cCGGCuGCCUUuuAUcCCgGUCgCCGCg -3'
miRNA:   3'- caGCCG-CGGAAuuUAcGGgUAG-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 94676 0.66 0.938779
Target:  5'- -aCGGCGCg--GGAU-CCCGagCCCGCg -3'
miRNA:   3'- caGCCGCGgaaUUUAcGGGUa-GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 97823 0.66 0.938779
Target:  5'- -cCGGgGCCcgGAAaGCCCA--CCGCg -3'
miRNA:   3'- caGCCgCGGaaUUUaCGGGUagGGCG- -5'
21547 5' -54.9 NC_004812.1 + 83608 0.66 0.938779
Target:  5'- --gGGCGCCagUGGGUGCgCgCAUCCacaaCGCg -3'
miRNA:   3'- cagCCGCGGa-AUUUACG-G-GUAGG----GCG- -5'
21547 5' -54.9 NC_004812.1 + 65461 0.66 0.938779
Target:  5'- -cCGGCcCCcgGAccGCCCGUCCC-Cg -3'
miRNA:   3'- caGCCGcGGaaUUuaCGGGUAGGGcG- -5'
21547 5' -54.9 NC_004812.1 + 6191 0.66 0.938779
Target:  5'- -gCGGagGCCcgGGGcGCCCGgcggCCCGCg -3'
miRNA:   3'- caGCCg-CGGaaUUUaCGGGUa---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 10394 0.66 0.938779
Target:  5'- --gGGCGCCc---AUGCCCAgaaCGCg -3'
miRNA:   3'- cagCCGCGGaauuUACGGGUaggGCG- -5'
21547 5' -54.9 NC_004812.1 + 120679 0.66 0.938779
Target:  5'- -gCGGCGC------UGCCCcgCCUGCc -3'
miRNA:   3'- caGCCGCGgaauuuACGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 112236 0.66 0.938298
Target:  5'- -gCGGCGCCgcgGGcugcgccccgggcAcGCCCuuugCCCGCg -3'
miRNA:   3'- caGCCGCGGaa-UU-------------UaCGGGua--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 137456 0.66 0.936839
Target:  5'- --gGGCGCCgccgccgcGCCC--CCCGCg -3'
miRNA:   3'- cagCCGCGGaauuua--CGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 130567 0.66 0.935855
Target:  5'- --gGGCGCCgcgcccccgGCCCcggcCCCGCc -3'
miRNA:   3'- cagCCGCGGaauuua---CGGGua--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 5058 0.66 0.935855
Target:  5'- --gGGCGCCgcgcccccgGCCCcggcCCCGCc -3'
miRNA:   3'- cagCCGCGGaauuua---CGGGua--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 10285 0.66 0.933858
Target:  5'- uUCGGCGCg--GAGaGCCCGccUCCCa- -3'
miRNA:   3'- cAGCCGCGgaaUUUaCGGGU--AGGGcg -5'
21547 5' -54.9 NC_004812.1 + 3543 0.66 0.933858
Target:  5'- -gCGGCGCCgggccgGCUCuUCuuGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuAGggCG- -5'
21547 5' -54.9 NC_004812.1 + 58314 0.66 0.933858
Target:  5'- cGUCGuccacGCGCCgg-GGUGCUCGUCgaUCGCg -3'
miRNA:   3'- -CAGC-----CGCGGaauUUACGGGUAG--GGCG- -5'
21547 5' -54.9 NC_004812.1 + 54658 0.66 0.933858
Target:  5'- -gCGGCcCCUgac--GCCCGccgCCCGCg -3'
miRNA:   3'- caGCCGcGGAauuuaCGGGUa--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 129051 0.66 0.933858
Target:  5'- -gCGGCGCCgggccgGCUCuUCuuGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuAGggCG- -5'
21547 5' -54.9 NC_004812.1 + 92305 0.66 0.933858
Target:  5'- cGUCGGCcCCgguc--GCCCcgccgCCCGCu -3'
miRNA:   3'- -CAGCCGcGGaauuuaCGGGua---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 43633 0.66 0.933858
Target:  5'- -gCGGCGCCgcGA---UCCAUCgCCGCc -3'
miRNA:   3'- caGCCGCGGaaUUuacGGGUAG-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 67493 0.66 0.933858
Target:  5'- -cUGGCGCCcgcgg-GCCguCGUCUCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGG--GUAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.