miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21548 3' -59.1 NC_004812.1 + 145814 0.65 0.7895
Target:  5'- gGUGUGGGCGGcgggGUCggcggcccacgCCCGGGGacugucuugcggcGCGAAc -3'
miRNA:   3'- -CACACCUGCCa---CAG-----------GGGCCCU-------------CGUUU- -5'
21548 3' -59.1 NC_004812.1 + 86005 0.66 0.781333
Target:  5'- uGUGgGGugGGUGUgCCgGGGcgugGGCGGu -3'
miRNA:   3'- -CACaCCugCCACAgGGgCCC----UCGUUu -5'
21548 3' -59.1 NC_004812.1 + 107878 0.66 0.781333
Target:  5'- -cGgggGGGCGGUcGUCCuCCGGGccGCAc- -3'
miRNA:   3'- caCa--CCUGCCA-CAGG-GGCCCu-CGUuu -5'
21548 3' -59.1 NC_004812.1 + 45258 0.66 0.781333
Target:  5'- -gGUGGGgucuCGGggGUCCUCGGcGGGCGGg -3'
miRNA:   3'- caCACCU----GCCa-CAGGGGCC-CUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 122420 0.66 0.772135
Target:  5'- -gGUGGacgcGCGGUGggCCCGGGcGGCGu- -3'
miRNA:   3'- caCACC----UGCCACagGGGCCC-UCGUuu -5'
21548 3' -59.1 NC_004812.1 + 3516 0.66 0.772135
Target:  5'- ---gGGGcCGGcGgCCCCGGGGGCGGGg -3'
miRNA:   3'- cacaCCU-GCCaCaGGGGCCCUCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 153321 0.66 0.772135
Target:  5'- -gGUGGacgcGCGGUGggCCCGGGcGGCGu- -3'
miRNA:   3'- caCACC----UGCCACagGGGCCC-UCGUuu -5'
21548 3' -59.1 NC_004812.1 + 129024 0.66 0.772135
Target:  5'- ---gGGGcCGGcGgCCCCGGGGGCGGGg -3'
miRNA:   3'- cacaCCU-GCCaCaGGGGCCCUCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 109100 0.66 0.762814
Target:  5'- cGUGcGGACGGUggcggcgacGUCCCCGGuGAucuucugagGCAGc -3'
miRNA:   3'- -CACaCCUGCCA---------CAGGGGCC-CU---------CGUUu -5'
21548 3' -59.1 NC_004812.1 + 23666 0.66 0.762814
Target:  5'- ---gGGGCGGcGUCCCCGGucgccuAGCAAc -3'
miRNA:   3'- cacaCCUGCCaCAGGGGCCc-----UCGUUu -5'
21548 3' -59.1 NC_004812.1 + 106131 0.66 0.762814
Target:  5'- ---gGGA-GGUGgcuuuuacCCCCGGGAGCGGc -3'
miRNA:   3'- cacaCCUgCCACa-------GGGGCCCUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 149174 0.66 0.762814
Target:  5'- ---gGGGCGGcGUCCCCGGucgccuAGCAAc -3'
miRNA:   3'- cacaCCUGCCaCAGGGGCCc-----UCGUUu -5'
21548 3' -59.1 NC_004812.1 + 28255 0.66 0.753381
Target:  5'- -cGUGGACGccGUGccCCCCGaGGAGUg-- -3'
miRNA:   3'- caCACCUGC--CACa-GGGGC-CCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 153763 0.66 0.753381
Target:  5'- -cGUGGACGccGUGccCCCCGaGGAGUg-- -3'
miRNA:   3'- caCACCUGC--CACa-GGGGC-CCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 103693 0.66 0.743843
Target:  5'- -aGUaGGCGGgcagGUCCucccggcgcgCCGGGAGCGAGg -3'
miRNA:   3'- caCAcCUGCCa---CAGG----------GGCCCUCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 125927 0.67 0.73421
Target:  5'- cGUGUGG-CGGcucGUCCgCGGGgacgAGCGAAu -3'
miRNA:   3'- -CACACCuGCCa--CAGGgGCCC----UCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 97887 0.67 0.73421
Target:  5'- cUGUGG-UGGUGUCUCCGGucgugcuuGAGCu-- -3'
miRNA:   3'- cACACCuGCCACAGGGGCC--------CUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 51805 0.67 0.724491
Target:  5'- -gGUaGGuGCGGUGUCUaCCGGGAGUu-- -3'
miRNA:   3'- caCA-CC-UGCCACAGG-GGCCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 81800 0.67 0.694902
Target:  5'- gGUGUGGGCGcGguucgGgcgggCCCgCGGGGGCGc- -3'
miRNA:   3'- -CACACCUGC-Ca----Ca----GGG-GCCCUCGUuu -5'
21548 3' -59.1 NC_004812.1 + 101620 0.67 0.684925
Target:  5'- -aGUGGACGGacucGUCCcacgcggagauCCGGGGGCc-- -3'
miRNA:   3'- caCACCUGCCa---CAGG-----------GGCCCUCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.