miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21548 3' -59.1 NC_004812.1 + 11828 1.05 0.002586
Target:  5'- gGUGUGGACGGUGUCCCCGGGAGCAAAc -3'
miRNA:   3'- -CACACCUGCCACAGGGGCCCUCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 122197 0.75 0.298349
Target:  5'- -gGUGGGCGGgcUGUcugggcgccgCCCCGGGGGCGGg -3'
miRNA:   3'- caCACCUGCC--ACA----------GGGGCCCUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 153098 0.75 0.298349
Target:  5'- -gGUGGGCGGgcUGUcugggcgccgCCCCGGGGGCGGg -3'
miRNA:   3'- caCACCUGCC--ACA----------GGGGCCCUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 78839 0.75 0.298349
Target:  5'- -cGUGcGGCGGUGUCCCCcGaGGAGCc-- -3'
miRNA:   3'- caCAC-CUGCCACAGGGG-C-CCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 127199 0.73 0.354553
Target:  5'- aUGUGGGCGGUGUagccgaucuugauaCCCCGGaaugacgcGAGCGAc -3'
miRNA:   3'- cACACCUGCCACA--------------GGGGCC--------CUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 144860 0.72 0.39737
Target:  5'- gGUGUGGguGCGGUucgacGUCCCCGaGGAGUg-- -3'
miRNA:   3'- -CACACC--UGCCA-----CAGGGGC-CCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 109603 0.7 0.554257
Target:  5'- -gGUGGccAUGGcG-CCCCGGGGGCAGg -3'
miRNA:   3'- caCACC--UGCCaCaGGGGCCCUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 152148 0.69 0.563185
Target:  5'- -cGUGGGCGGgGUCgCCGGGguacucgGGCGGGg -3'
miRNA:   3'- caCACCUGCCaCAGgGGCCC-------UCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 121247 0.69 0.563185
Target:  5'- -cGUGGGCGGgGUCgCCGGGguacucgGGCGGGg -3'
miRNA:   3'- caCACCUGCCaCAGgGGCCC-------UCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 62535 0.69 0.564179
Target:  5'- ---cGGGCGGcagggGUUCCCGGGGGCc-- -3'
miRNA:   3'- cacaCCUGCCa----CAGGGGCCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 82149 0.69 0.594199
Target:  5'- -cGUGGGCGGUGgacgagUUCCGGGGcGCGc- -3'
miRNA:   3'- caCACCUGCCACa-----GGGGCCCU-CGUuu -5'
21548 3' -59.1 NC_004812.1 + 76197 0.69 0.604268
Target:  5'- ---gGGACGG-GUCCCCGGcgGAGCc-- -3'
miRNA:   3'- cacaCCUGCCaCAGGGGCC--CUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 104317 0.69 0.614358
Target:  5'- ---gGGACGGcGcCUCCGGGGGCGGc -3'
miRNA:   3'- cacaCCUGCCaCaGGGGCCCUCGUUu -5'
21548 3' -59.1 NC_004812.1 + 79739 0.68 0.644676
Target:  5'- ---cGGGCGGacaUCCCCGGGGGguGGa -3'
miRNA:   3'- cacaCCUGCCac-AGGGGCCCUCguUU- -5'
21548 3' -59.1 NC_004812.1 + 109212 0.68 0.644676
Target:  5'- --aUGGuACGGUG-CCCCGGcgGGGCGAGg -3'
miRNA:   3'- cacACC-UGCCACaGGGGCC--CUCGUUU- -5'
21548 3' -59.1 NC_004812.1 + 50105 0.68 0.654773
Target:  5'- -gGUGGACGac--CCCCGGGGGCc-- -3'
miRNA:   3'- caCACCUGCcacaGGGGCCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 5602 0.68 0.654773
Target:  5'- ---gGGGCGGgGUCCCCcaGGGGGCc-- -3'
miRNA:   3'- cacaCCUGCCaCAGGGG--CCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 36503 0.68 0.654773
Target:  5'- ---gGGGCGGgGUCCCCcaGGGGGCc-- -3'
miRNA:   3'- cacaCCUGCCaCAGGGG--CCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 93552 0.68 0.678918
Target:  5'- cGUGgGGGCGGaGccagacgcccccgccUCCCCGGGGGCc-- -3'
miRNA:   3'- -CACaCCUGCCaC---------------AGGGGCCCUCGuuu -5'
21548 3' -59.1 NC_004812.1 + 101620 0.67 0.684925
Target:  5'- -aGUGGACGGacucGUCCcacgcggagauCCGGGGGCc-- -3'
miRNA:   3'- caCACCUGCCa---CAGG-----------GGCCCUCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.