miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21548 5' -56.5 NC_004812.1 + 107360 0.66 0.91257
Target:  5'- cCGUUgGGG-GCGgGGGGAuGGCCG-GAa -3'
miRNA:   3'- -GCAGaCCCaCGCgUCCCU-UUGGCaCU- -5'
21548 5' -56.5 NC_004812.1 + 82671 0.66 0.91257
Target:  5'- aCGUCU-GGUGCaGCAGGGcgagcaggcGCCGcUGGg -3'
miRNA:   3'- -GCAGAcCCACG-CGUCCCuu-------UGGC-ACU- -5'
21548 5' -56.5 NC_004812.1 + 71039 0.66 0.910797
Target:  5'- gCGUUcGGGUG-GCGGGGcGgccauguccucgauGCCGUGGa -3'
miRNA:   3'- -GCAGaCCCACgCGUCCCuU--------------UGGCACU- -5'
21548 5' -56.5 NC_004812.1 + 71728 0.66 0.906578
Target:  5'- aGUCgcucGGGUgGCGgAGGGccaggauGACCGUGc -3'
miRNA:   3'- gCAGa---CCCA-CGCgUCCCu------UUGGCACu -5'
21548 5' -56.5 NC_004812.1 + 98489 0.66 0.906578
Target:  5'- gGUCgUGGGUggggcgGCGCGGGGc-GCCGg-- -3'
miRNA:   3'- gCAG-ACCCA------CGCGUCCCuuUGGCacu -5'
21548 5' -56.5 NC_004812.1 + 146890 0.66 0.905966
Target:  5'- gGUCUGGG-GUGUGGGGGuuGCCcucguuuugagggGUGGa -3'
miRNA:   3'- gCAGACCCaCGCGUCCCUu-UGG-------------CACU- -5'
21548 5' -56.5 NC_004812.1 + 145750 0.66 0.900989
Target:  5'- gGUCgGGGggcucgucggucgucGCGCGGGGGGguGCCG-GAa -3'
miRNA:   3'- gCAGaCCCa--------------CGCGUCCCUU--UGGCaCU- -5'
21548 5' -56.5 NC_004812.1 + 72041 0.66 0.900356
Target:  5'- gGUCUGGGgGgGCGGGGGGucgggggcGCUGgGGg -3'
miRNA:   3'- gCAGACCCaCgCGUCCCUU--------UGGCaCU- -5'
21548 5' -56.5 NC_004812.1 + 32662 0.66 0.900356
Target:  5'- cCGggCUGGGcucGCGCGGgaGGAGGCCGg-- -3'
miRNA:   3'- -GCa-GACCCa--CGCGUC--CCUUUGGCacu -5'
21548 5' -56.5 NC_004812.1 + 145336 0.66 0.893906
Target:  5'- uCGUg-GGcGUGCuCGGGGcgGCCGUGGg -3'
miRNA:   3'- -GCAgaCC-CACGcGUCCCuuUGGCACU- -5'
21548 5' -56.5 NC_004812.1 + 46521 0.66 0.893906
Target:  5'- uCGUCUGGGggaGCAGGG---CCGcGAa -3'
miRNA:   3'- -GCAGACCCacgCGUCCCuuuGGCaCU- -5'
21548 5' -56.5 NC_004812.1 + 91374 0.66 0.891927
Target:  5'- --gUUGGcGUagGCGCGGGGGuggcggcucagcucGGCCGUGAg -3'
miRNA:   3'- gcaGACC-CA--CGCGUCCCU--------------UUGGCACU- -5'
21548 5' -56.5 NC_004812.1 + 66681 0.66 0.88723
Target:  5'- gGUUguuGGUGCGCAGG-AAGCCGa-- -3'
miRNA:   3'- gCAGac-CCACGCGUCCcUUUGGCacu -5'
21548 5' -56.5 NC_004812.1 + 37720 0.66 0.88723
Target:  5'- gCGUCUGGG-GCugGguGGGggGCgGcGGc -3'
miRNA:   3'- -GCAGACCCaCG--CguCCCuuUGgCaCU- -5'
21548 5' -56.5 NC_004812.1 + 6819 0.66 0.88723
Target:  5'- gCGUCUGGG-GCugGguGGGggGCgGcGGc -3'
miRNA:   3'- -GCAGACCCaCG--CguCCCuuUGgCaCU- -5'
21548 5' -56.5 NC_004812.1 + 123509 0.66 0.880334
Target:  5'- gGUCUGGGgucggGCGCcGGGAGcgcgGCgGgGAg -3'
miRNA:   3'- gCAGACCCa----CGCGuCCCUU----UGgCaCU- -5'
21548 5' -56.5 NC_004812.1 + 143887 0.66 0.880334
Target:  5'- gGggUGGG-GCGguGGGGAAgCGUGu -3'
miRNA:   3'- gCagACCCaCGCguCCCUUUgGCACu -5'
21548 5' -56.5 NC_004812.1 + 26391 0.67 0.87322
Target:  5'- gGUC-GGGcGCGCuucGGGGAucgcCCGUGGg -3'
miRNA:   3'- gCAGaCCCaCGCG---UCCCUuu--GGCACU- -5'
21548 5' -56.5 NC_004812.1 + 98235 0.67 0.87322
Target:  5'- gGUCUccgcGGGgcgGCGCGGcccuGGAGGCCGgGAc -3'
miRNA:   3'- gCAGA----CCCa--CGCGUC----CCUUUGGCaCU- -5'
21548 5' -56.5 NC_004812.1 + 142543 0.67 0.87322
Target:  5'- gCGgcugCUGGGguuucuguugGCGCuGGG--GCCGUGGg -3'
miRNA:   3'- -GCa---GACCCa---------CGCGuCCCuuUGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.