miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21549 3' -54 NC_004812.1 + 38753 0.66 0.955976
Target:  5'- ---gGGGCGGGGgucggUCGUAGcgGCGCc -3'
miRNA:   3'- caugUCUGUCCCg----AGCAUCuaCGCGu -5'
21549 3' -54 NC_004812.1 + 3132 0.66 0.955976
Target:  5'- --cCGGGCAGcGGCgCGUAGAgcaccagcacGCGCAc -3'
miRNA:   3'- cauGUCUGUC-CCGaGCAUCUa---------CGCGU- -5'
21549 3' -54 NC_004812.1 + 100079 0.66 0.955976
Target:  5'- gGUGgGGuCGGGGCUCGUcgucccccccgAGAUuaGCGa -3'
miRNA:   3'- -CAUgUCuGUCCCGAGCA-----------UCUAcgCGU- -5'
21549 3' -54 NC_004812.1 + 128641 0.66 0.955976
Target:  5'- --cCGGGCAGcGGCgCGUAGAgcaccagcacGCGCAc -3'
miRNA:   3'- cauGUCUGUC-CCGaGCAUCUa---------CGCGU- -5'
21549 3' -54 NC_004812.1 + 7852 0.66 0.955976
Target:  5'- ---gGGGCGGGGgucggUCGUAGcgGCGCc -3'
miRNA:   3'- caugUCUGUCCCg----AGCAUCuaCGCGu -5'
21549 3' -54 NC_004812.1 + 70940 0.66 0.955976
Target:  5'- aUACAGGC-GGGCggCGUAcuGcgGCGCc -3'
miRNA:   3'- cAUGUCUGuCCCGa-GCAU--CuaCGCGu -5'
21549 3' -54 NC_004812.1 + 67303 0.66 0.951945
Target:  5'- -gGCGGGagcGGGCUCGgGGAggcgaGCGCGg -3'
miRNA:   3'- caUGUCUgu-CCCGAGCaUCUa----CGCGU- -5'
21549 3' -54 NC_004812.1 + 100296 0.66 0.951528
Target:  5'- -cACGGACgcgccgcccuccaGGGGCUCGggggGGAaGUGCu -3'
miRNA:   3'- caUGUCUG-------------UCCCGAGCa---UCUaCGCGu -5'
21549 3' -54 NC_004812.1 + 122304 0.66 0.947673
Target:  5'- -cGCGuGACgGGGGCgaacgCGUGG-UGCGCGu -3'
miRNA:   3'- caUGU-CUG-UCCCGa----GCAUCuACGCGU- -5'
21549 3' -54 NC_004812.1 + 43200 0.66 0.947673
Target:  5'- gGUACAGGCuGGGGC-CGUGca-GCGCc -3'
miRNA:   3'- -CAUGUCUG-UCCCGaGCAUcuaCGCGu -5'
21549 3' -54 NC_004812.1 + 79264 0.66 0.944993
Target:  5'- -cGCGGGCcaGGGGCUCGUcguccguaaggagcuGGAUGaGCu -3'
miRNA:   3'- caUGUCUG--UCCCGAGCA---------------UCUACgCGu -5'
21549 3' -54 NC_004812.1 + 102513 0.66 0.943157
Target:  5'- -gACGGACGcGGGaguuugCGUaucGGGUGCGCGc -3'
miRNA:   3'- caUGUCUGU-CCCga----GCA---UCUACGCGU- -5'
21549 3' -54 NC_004812.1 + 125251 0.66 0.943157
Target:  5'- -cGCAGGCGcgccggcggcccGGGCUCGcGGcggGCGCGc -3'
miRNA:   3'- caUGUCUGU------------CCCGAGCaUCua-CGCGU- -5'
21549 3' -54 NC_004812.1 + 107294 0.66 0.943157
Target:  5'- gGUACAG-CGGGcCUaCGUAGuugGCGCAc -3'
miRNA:   3'- -CAUGUCuGUCCcGA-GCAUCua-CGCGU- -5'
21549 3' -54 NC_004812.1 + 156152 0.66 0.943157
Target:  5'- -cGCAGGCGcgccggcggcccGGGCUCGcGGcggGCGCGc -3'
miRNA:   3'- caUGUCUGU------------CCCGAGCaUCua-CGCGU- -5'
21549 3' -54 NC_004812.1 + 110266 0.66 0.943157
Target:  5'- cUGCAG-CAGGGCggcUCGUGGcgG-GCGg -3'
miRNA:   3'- cAUGUCuGUCCCG---AGCAUCuaCgCGU- -5'
21549 3' -54 NC_004812.1 + 59518 0.66 0.943157
Target:  5'- -gGCGGACAGGGggCGgUAGccgagGCGCu -3'
miRNA:   3'- caUGUCUGUCCCgaGC-AUCua---CGCGu -5'
21549 3' -54 NC_004812.1 + 19889 0.66 0.943157
Target:  5'- -cGCGGGgGGGG-UCGUGGGUGCu-- -3'
miRNA:   3'- caUGUCUgUCCCgAGCAUCUACGcgu -5'
21549 3' -54 NC_004812.1 + 93538 0.66 0.943157
Target:  5'- cGgcCGGAgGGGGC-CGUGGggGCGgAg -3'
miRNA:   3'- -CauGUCUgUCCCGaGCAUCuaCGCgU- -5'
21549 3' -54 NC_004812.1 + 20416 0.66 0.943157
Target:  5'- gGUGCGG-CAGGcGCUgCGgucgauguGGUGCGCGu -3'
miRNA:   3'- -CAUGUCuGUCC-CGA-GCau------CUACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.