miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21549 3' -54 NC_004812.1 + 2150 0.77 0.441569
Target:  5'- -cGCGGGCGGGGCUCGcGGcgGCGg- -3'
miRNA:   3'- caUGUCUGUCCCGAGCaUCuaCGCgu -5'
21549 3' -54 NC_004812.1 + 2790 0.69 0.829264
Target:  5'- -cACGGcGCAGGGCagguagaCGUGGcgGCGCGc -3'
miRNA:   3'- caUGUC-UGUCCCGa------GCAUCuaCGCGU- -5'
21549 3' -54 NC_004812.1 + 3095 0.68 0.884361
Target:  5'- -gGCGGGCGGGGCggg-GGAgGCGCc -3'
miRNA:   3'- caUGUCUGUCCCGagcaUCUaCGCGu -5'
21549 3' -54 NC_004812.1 + 3132 0.66 0.955976
Target:  5'- --cCGGGCAGcGGCgCGUAGAgcaccagcacGCGCAc -3'
miRNA:   3'- cauGUCUGUC-CCGaGCAUCUa---------CGCGU- -5'
21549 3' -54 NC_004812.1 + 3577 0.67 0.916854
Target:  5'- -gGCAGGCGGcGGCggCGgcGGgcggGCGCGc -3'
miRNA:   3'- caUGUCUGUC-CCGa-GCauCUa---CGCGU- -5'
21549 3' -54 NC_004812.1 + 7525 0.68 0.884361
Target:  5'- -gAgGGAgGGGGggCGgcGAUGCGCGg -3'
miRNA:   3'- caUgUCUgUCCCgaGCauCUACGCGU- -5'
21549 3' -54 NC_004812.1 + 7852 0.66 0.955976
Target:  5'- ---gGGGCGGGGgucggUCGUAGcgGCGCc -3'
miRNA:   3'- caugUCUGUCCCg----AGCAUCuaCGCGu -5'
21549 3' -54 NC_004812.1 + 11607 0.73 0.642767
Target:  5'- -cGCGaGCAGGGUcCGUAGcgGCGCAc -3'
miRNA:   3'- caUGUcUGUCCCGaGCAUCuaCGCGU- -5'
21549 3' -54 NC_004812.1 + 11707 1.08 0.004477
Target:  5'- gGUACAGACAGGGCUCGUAGAUGCGCAu -3'
miRNA:   3'- -CAUGUCUGUCCCGAGCAUCUACGCGU- -5'
21549 3' -54 NC_004812.1 + 17773 0.7 0.820584
Target:  5'- -gGCGGGCgugGGGGCgagaacgggGUGGGUGCGCGc -3'
miRNA:   3'- caUGUCUG---UCCCGag-------CAUCUACGCGU- -5'
21549 3' -54 NC_004812.1 + 18808 0.66 0.938395
Target:  5'- cGUcCAGGCGGGGC----GGGUGUGCGg -3'
miRNA:   3'- -CAuGUCUGUCCCGagcaUCUACGCGU- -5'
21549 3' -54 NC_004812.1 + 19889 0.66 0.943157
Target:  5'- -cGCGGGgGGGG-UCGUGGGUGCu-- -3'
miRNA:   3'- caUGUCUgUCCCgAGCAUCUACGcgu -5'
21549 3' -54 NC_004812.1 + 20416 0.66 0.943157
Target:  5'- gGUGCGG-CAGGcGCUgCGgucgauguGGUGCGCGu -3'
miRNA:   3'- -CAUGUCuGUCC-CGA-GCau------CUACGCGU- -5'
21549 3' -54 NC_004812.1 + 20699 0.7 0.820584
Target:  5'- -aGCAGcuGCAGGuagcGCUCGUAGuggggGCGCAu -3'
miRNA:   3'- caUGUC--UGUCC----CGAGCAUCua---CGCGU- -5'
21549 3' -54 NC_004812.1 + 26627 0.7 0.7935
Target:  5'- -gACAG-CAGcGcCUCGUGGGUGCGCu -3'
miRNA:   3'- caUGUCuGUCcC-GAGCAUCUACGCGu -5'
21549 3' -54 NC_004812.1 + 26687 0.68 0.884361
Target:  5'- ---aGGGCGGGGCUgCGUAGGcgGCGaCGg -3'
miRNA:   3'- caugUCUGUCCCGA-GCAUCUa-CGC-GU- -5'
21549 3' -54 NC_004812.1 + 29230 0.71 0.749401
Target:  5'- -gGCGGGCGGGGgUCGcGGAggagcgggccggggcUGCGCGg -3'
miRNA:   3'- caUGUCUGUCCCgAGCaUCU---------------ACGCGU- -5'
21549 3' -54 NC_004812.1 + 30238 0.74 0.600929
Target:  5'- -cGCGGGCGGGGCUCGcGGccGCGgGg -3'
miRNA:   3'- caUGUCUGUCCCGAGCaUCuaCGCgU- -5'
21549 3' -54 NC_004812.1 + 35651 0.67 0.902663
Target:  5'- -cGCGGGCgcgcgcgggggucgGGGGCUCuGUGGcgccgcGUGCGCGg -3'
miRNA:   3'- caUGUCUG--------------UCCCGAG-CAUC------UACGCGU- -5'
21549 3' -54 NC_004812.1 + 37148 0.68 0.891343
Target:  5'- -cGCAGAgGaGGGC-CGUGG-UGCGCu -3'
miRNA:   3'- caUGUCUgU-CCCGaGCAUCuACGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.