miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21549 5' -58.6 NC_004812.1 + 23041 0.66 0.851821
Target:  5'- -cCGGcaGGACGccgccgagcUCGAcGCCGCGgCCCGCAu -3'
miRNA:   3'- gaGCC--CCUGC---------AGCU-UGGCGU-GGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 39164 0.66 0.851821
Target:  5'- -cCGGGGGCGcCGGggGCCG-GCCgACGa -3'
miRNA:   3'- gaGCCCCUGCaGCU--UGGCgUGGgUGU- -5'
21549 5' -58.6 NC_004812.1 + 61006 0.66 0.851821
Target:  5'- -cCGGuGcCGUUGcugcuGCCGCGCCCGCGc -3'
miRNA:   3'- gaGCCcCuGCAGCu----UGGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 80303 0.66 0.851821
Target:  5'- --aGGcGGACGgCG-ACCGCGCCgCGCu -3'
miRNA:   3'- gagCC-CCUGCaGCuUGGCGUGG-GUGu -5'
21549 5' -58.6 NC_004812.1 + 8263 0.66 0.851821
Target:  5'- -cCGGGGGCGcCGGggGCCG-GCCgACGa -3'
miRNA:   3'- gaGCCCCUGCaGCU--UGGCgUGGgUGU- -5'
21549 5' -58.6 NC_004812.1 + 108177 0.66 0.851821
Target:  5'- -aCGGGaagauuGGCGUCGuACCGCAgCgGCGg -3'
miRNA:   3'- gaGCCC------CUGCAGCuUGGCGUgGgUGU- -5'
21549 5' -58.6 NC_004812.1 + 127809 0.66 0.851821
Target:  5'- gUCGGGGucCGgcUCGAGCagggCGCGCgCGCAg -3'
miRNA:   3'- gAGCCCCu-GC--AGCUUG----GCGUGgGUGU- -5'
21549 5' -58.6 NC_004812.1 + 35547 0.66 0.851821
Target:  5'- --gGGGGGCG-CGGGCgGgGCCCGg- -3'
miRNA:   3'- gagCCCCUGCaGCUUGgCgUGGGUgu -5'
21549 5' -58.6 NC_004812.1 + 90241 0.66 0.851821
Target:  5'- uCUCGGGGAUGggguacuaccUCGGcaucggcggcuGCUGC-CCCGCc -3'
miRNA:   3'- -GAGCCCCUGC----------AGCU-----------UGGCGuGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 5141 0.66 0.851821
Target:  5'- -cCGGGGACGgCGG--CGUcgGCCCGCGg -3'
miRNA:   3'- gaGCCCCUGCaGCUugGCG--UGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 2301 0.66 0.851821
Target:  5'- gUCGGGGucCGgcUCGAGCagggCGCGCgCGCAg -3'
miRNA:   3'- gAGCCCCu-GC--AGCUUG----GCGUGgGUGU- -5'
21549 5' -58.6 NC_004812.1 + 25392 0.66 0.851821
Target:  5'- --gGGGGAgGUCGG--CGCGCUCGCc -3'
miRNA:   3'- gagCCCCUgCAGCUugGCGUGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 29900 0.66 0.851821
Target:  5'- cCUCGugcaGGugGgccgCGAugCGCGgCCCGCGg -3'
miRNA:   3'- -GAGCc---CCugCa---GCUugGCGU-GGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 17634 0.66 0.851821
Target:  5'- -cUGGuGGuCGUCGGA-CGCGCCCAa- -3'
miRNA:   3'- gaGCC-CCuGCAGCUUgGCGUGGGUgu -5'
21549 5' -58.6 NC_004812.1 + 108764 0.66 0.851821
Target:  5'- gCUgGGGGGCG-CGGGg-GCGCCUACGa -3'
miRNA:   3'- -GAgCCCCUGCaGCUUggCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 150900 0.66 0.851821
Target:  5'- --gGGGGAgGUCGG--CGCGCUCGCc -3'
miRNA:   3'- gagCCCCUgCAGCUugGCGUGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 85089 0.66 0.851821
Target:  5'- --aGGGaGGcCGcCGAGgccguCCGCACCCACGu -3'
miRNA:   3'- gagCCC-CU-GCaGCUU-----GGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 130650 0.66 0.851821
Target:  5'- -cCGGGGACGgCGG--CGUcgGCCCGCGg -3'
miRNA:   3'- gaGCCCCUGCaGCUugGCG--UGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 83627 0.66 0.851056
Target:  5'- aCUCGcgcgagcGGGGCGcCGAcGCCGC-CCUGCGa -3'
miRNA:   3'- -GAGC-------CCCUGCaGCU-UGGCGuGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 19789 0.66 0.844087
Target:  5'- -cCGGGG-CGaagaGGGCCGCucgGCCCACc -3'
miRNA:   3'- gaGCCCCuGCag--CUUGGCG---UGGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.