miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21549 5' -58.6 NC_004812.1 + 124958 0.72 0.51432
Target:  5'- -aCGGGGAagaggGUCGcGCCGCcCCCACc -3'
miRNA:   3'- gaGCCCCUg----CAGCuUGGCGuGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 83735 0.73 0.423792
Target:  5'- -cCGGGGACG-CGGGCCcgGCugCCGCc -3'
miRNA:   3'- gaGCCCCUGCaGCUUGG--CGugGGUGu -5'
21549 5' -58.6 NC_004812.1 + 31571 0.73 0.453544
Target:  5'- cCUCGGccgcGACGUCGAacggcgcgaggacggGCCGCGCgCCGCGc -3'
miRNA:   3'- -GAGCCc---CUGCAGCU---------------UGGCGUG-GGUGU- -5'
21549 5' -58.6 NC_004812.1 + 99783 0.73 0.467933
Target:  5'- uCUCGGGGACGgaguugugCGGcgcgccgccaGCUGCGCCgCGCGa -3'
miRNA:   3'- -GAGCCCCUGCa-------GCU----------UGGCGUGG-GUGU- -5'
21549 5' -58.6 NC_004812.1 + 74069 0.72 0.477044
Target:  5'- -gCGGcGGGCGcgcgCGGGCCGCcucgGCCCGCAu -3'
miRNA:   3'- gaGCC-CCUGCa---GCUUGGCG----UGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 122898 0.72 0.495523
Target:  5'- -aCGGGGAUGgugcuguaCGAGCCGUuggccugcacGCCCACGa -3'
miRNA:   3'- gaGCCCCUGCa-------GCUUGGCG----------UGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 74513 0.72 0.499258
Target:  5'- aCUCGGccagcaggcggcccaGGGCGUCGGcguucaucucccACgGCACCCGCGc -3'
miRNA:   3'- -GAGCC---------------CCUGCAGCU------------UGgCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 99905 0.72 0.507707
Target:  5'- cCUCGGGcgugggcaggaggcaGccgccgaagaugcGCGUCGAcGCCGCGCCCGCGu -3'
miRNA:   3'- -GAGCCC---------------C-------------UGCAGCU-UGGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 15408 0.72 0.51432
Target:  5'- -cCGGGGcCGUCGAGCgCGCcGCCC-CGg -3'
miRNA:   3'- gaGCCCCuGCAGCUUG-GCG-UGGGuGU- -5'
21549 5' -58.6 NC_004812.1 + 133058 0.73 0.423792
Target:  5'- aCUCGGGGGCGggcgCGGGgggcggucCCGCcCCCACc -3'
miRNA:   3'- -GAGCCCCUGCa---GCUU--------GGCGuGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 12133 0.74 0.415266
Target:  5'- gUUGGGGGCGcgCGGcGCCGgGCCCGCu -3'
miRNA:   3'- gAGCCCCUGCa-GCU-UGGCgUGGGUGu -5'
21549 5' -58.6 NC_004812.1 + 22912 0.74 0.398534
Target:  5'- -gCGGGGGCGU--GGCCGCGCCCccGCGc -3'
miRNA:   3'- gaGCCCCUGCAgcUUGGCGUGGG--UGU- -5'
21549 5' -58.6 NC_004812.1 + 91148 0.77 0.256382
Target:  5'- -cCGGGGGgGUCcAGCCGCACUCGCGc -3'
miRNA:   3'- gaGCCCCUgCAGcUUGGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 120893 0.76 0.287555
Target:  5'- gUCGGGGccGCGUgcCGAccCCGCGCCCGCAc -3'
miRNA:   3'- gAGCCCC--UGCA--GCUu-GGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 98062 0.76 0.300835
Target:  5'- gCUCGGGGGCGgccgGAGCCGgGCCC-CGg -3'
miRNA:   3'- -GAGCCCCUGCag--CUUGGCgUGGGuGU- -5'
21549 5' -58.6 NC_004812.1 + 154967 0.76 0.307651
Target:  5'- --gGGGGACGggCGGGCCGCgcgggACCCGCGc -3'
miRNA:   3'- gagCCCCUGCa-GCUUGGCG-----UGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 130553 0.76 0.321635
Target:  5'- -cCGGGGGCGcgCGAgggcGCCGCGCCCcCGg -3'
miRNA:   3'- gaGCCCCUGCa-GCU----UGGCGUGGGuGU- -5'
21549 5' -58.6 NC_004812.1 + 74808 0.75 0.366396
Target:  5'- -gCGGGccCGccCGAACCGCGCCCACAc -3'
miRNA:   3'- gaGCCCcuGCa-GCUUGGCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 59598 0.75 0.366396
Target:  5'- -aUGGGGGCG-CGGGCgGCGCUCGCGa -3'
miRNA:   3'- gaGCCCCUGCaGCUUGgCGUGGGUGU- -5'
21549 5' -58.6 NC_004812.1 + 127605 0.74 0.374261
Target:  5'- cCUCGGGG-CGgccCGGGCCGCGCUCcCAg -3'
miRNA:   3'- -GAGCCCCuGCa--GCUUGGCGUGGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.