miRNA display CGI


Results 1 - 20 of 713 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21550 3' -59.2 NC_004812.1 + 11190 0.66 0.810971
Target:  5'- uCGCGCcuuuuaACGGCCCGCCacGCcCGCg -3'
miRNA:   3'- uGCGUGugca--UGUCGGGCGG--CGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 61540 0.66 0.810971
Target:  5'- cCGgACgGCG-GCGGUCgcguaGCCGCUCGCg -3'
miRNA:   3'- uGCgUG-UGCaUGUCGGg----CGGCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 21139 0.66 0.810971
Target:  5'- aGCG-ACACGUuggugucgcCGGCgCGCaGCUCGCg -3'
miRNA:   3'- -UGCgUGUGCAu--------GUCGgGCGgCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 31677 0.66 0.810971
Target:  5'- cCGCugGgGgcGCAGCUCGUC-CUCGCc -3'
miRNA:   3'- uGCGugUgCa-UGUCGGGCGGcGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 80322 0.66 0.810971
Target:  5'- cGCGCuGCugGagGCGGCCgCGCgCGC-CGUc -3'
miRNA:   3'- -UGCG-UGugCa-UGUCGG-GCG-GCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 81025 0.66 0.810971
Target:  5'- -gGCACuACGUGCcGUucuuCCGCCGCggccaCGCc -3'
miRNA:   3'- ugCGUG-UGCAUGuCG----GGCGGCGa----GCG- -5'
21550 3' -59.2 NC_004812.1 + 70995 0.66 0.810971
Target:  5'- aACGC-CuccagACGGCCCGCuCGC-CGCc -3'
miRNA:   3'- -UGCGuGugca-UGUCGGGCG-GCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 111121 0.66 0.810971
Target:  5'- cCGUugACGc-CGGgCCGCCGCcaugcUCGCc -3'
miRNA:   3'- uGCGugUGCauGUCgGGCGGCG-----AGCG- -5'
21550 3' -59.2 NC_004812.1 + 132089 0.66 0.810971
Target:  5'- gACGCAgcCcCGaccGCAGCCC-CCGCggCGCg -3'
miRNA:   3'- -UGCGU--GuGCa--UGUCGGGcGGCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 67339 0.66 0.810971
Target:  5'- cGCGC-CGCGccGCGGCCUGCgCGUcccaCGCc -3'
miRNA:   3'- -UGCGuGUGCa-UGUCGGGCG-GCGa---GCG- -5'
21550 3' -59.2 NC_004812.1 + 106408 0.66 0.810971
Target:  5'- cGCGCGacaGCGgGgGGCCgCGgCGCUCGa -3'
miRNA:   3'- -UGCGUg--UGCaUgUCGG-GCgGCGAGCg -5'
21550 3' -59.2 NC_004812.1 + 77236 0.66 0.810971
Target:  5'- gACGCGgGggUGUGgGGCgCUGCC-CUCGCg -3'
miRNA:   3'- -UGCGUgU--GCAUgUCG-GGCGGcGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 56349 0.66 0.810971
Target:  5'- cCGgAgGCGUGCGGCagguagcgCCGCaGCUCGUu -3'
miRNA:   3'- uGCgUgUGCAUGUCG--------GGCGgCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 52657 0.66 0.810971
Target:  5'- aGCGgaGCGCGUGgAGCUgGuuGCggCGCu -3'
miRNA:   3'- -UGCg-UGUGCAUgUCGGgCggCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 133065 0.66 0.810971
Target:  5'- gGCGgGCGCGggggGCGGuCCCGCCcCcacCGCc -3'
miRNA:   3'- -UGCgUGUGCa---UGUC-GGGCGGcGa--GCG- -5'
21550 3' -59.2 NC_004812.1 + 96385 0.66 0.810971
Target:  5'- uCGguCAUGgcCGGCgaCGCCGCgcUCGCg -3'
miRNA:   3'- uGCguGUGCauGUCGg-GCGGCG--AGCG- -5'
21550 3' -59.2 NC_004812.1 + 7557 0.66 0.810971
Target:  5'- gGCGgGCGCGggggGCGGuCCCGCCcCcacCGCc -3'
miRNA:   3'- -UGCgUGUGCa---UGUC-GGGCGGcGa--GCG- -5'
21550 3' -59.2 NC_004812.1 + 112259 0.66 0.810971
Target:  5'- -gGCACGCccuuuGCCCGCgCGC-CGCu -3'
miRNA:   3'- ugCGUGUGcauguCGGGCG-GCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 75504 0.66 0.810116
Target:  5'- -gGCACGCcccccagcgcccgGUGCAcGUCCGCcCGCagCGCg -3'
miRNA:   3'- ugCGUGUG-------------CAUGU-CGGGCG-GCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 75091 0.66 0.810116
Target:  5'- aGCGCGCcugcuccaGCGUcuuggccGCGGCCgccgggauCGCCGCgaccCGCa -3'
miRNA:   3'- -UGCGUG--------UGCA-------UGUCGG--------GCGGCGa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.