miRNA display CGI


Results 21 - 40 of 713 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21550 3' -59.2 NC_004812.1 + 118647 0.66 0.808402
Target:  5'- gGCGC-CugGaGCGGCCCuggcgcgguccacaGUCGCggCGCg -3'
miRNA:   3'- -UGCGuGugCaUGUCGGG--------------CGGCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 149548 0.66 0.808402
Target:  5'- gGCGC-CugGaGCGGCCCuggcgcgguccacaGUCGCggCGCg -3'
miRNA:   3'- -UGCGuGugCaUGUCGGG--------------CGGCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 110589 0.66 0.802356
Target:  5'- gAUGCugACGcUGCAGCUucuCGCgCGCgaauUCGCc -3'
miRNA:   3'- -UGCGugUGC-AUGUCGG---GCG-GCG----AGCG- -5'
21550 3' -59.2 NC_004812.1 + 46975 0.66 0.802356
Target:  5'- aGCGCGgACGgGCgguugucauGGCCCGCCGgaCcgGCg -3'
miRNA:   3'- -UGCGUgUGCaUG---------UCGGGCGGCgaG--CG- -5'
21550 3' -59.2 NC_004812.1 + 101222 0.66 0.802356
Target:  5'- gACGCACAuCGguucaUGCGuGCCuCGCUGCU-GCg -3'
miRNA:   3'- -UGCGUGU-GC-----AUGU-CGG-GCGGCGAgCG- -5'
21550 3' -59.2 NC_004812.1 + 137001 0.66 0.802356
Target:  5'- gACGCGCggcugGCGUG-GGCCCGCCugGCg-GCg -3'
miRNA:   3'- -UGCGUG-----UGCAUgUCGGGCGG--CGagCG- -5'
21550 3' -59.2 NC_004812.1 + 69856 0.66 0.802356
Target:  5'- cUGCugACGaccggguCGGCCCGgCGCuggUCGCc -3'
miRNA:   3'- uGCGugUGCau-----GUCGGGCgGCG---AGCG- -5'
21550 3' -59.2 NC_004812.1 + 74987 0.66 0.802356
Target:  5'- cAUGUACGCccugGCGGCCagggGCgUGCUCGCc -3'
miRNA:   3'- -UGCGUGUGca--UGUCGGg---CG-GCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 41396 0.66 0.802356
Target:  5'- aACGC-CACGaAC-GCCCcucGCC-CUCGCg -3'
miRNA:   3'- -UGCGuGUGCaUGuCGGG---CGGcGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 92621 0.66 0.802356
Target:  5'- cUGCGCGCGUuCGcCCCGCUGCgcaccUGCc -3'
miRNA:   3'- uGCGUGUGCAuGUcGGGCGGCGa----GCG- -5'
21550 3' -59.2 NC_004812.1 + 119467 0.66 0.802356
Target:  5'- cGCGgGCGCGagACGGCCgcgggGCCGCg-GCg -3'
miRNA:   3'- -UGCgUGUGCa-UGUCGGg----CGGCGagCG- -5'
21550 3' -59.2 NC_004812.1 + 124033 0.66 0.802356
Target:  5'- cCGC-CGCGgGCGGgCCGCgGCgcCGCg -3'
miRNA:   3'- uGCGuGUGCaUGUCgGGCGgCGa-GCG- -5'
21550 3' -59.2 NC_004812.1 + 58199 0.66 0.802356
Target:  5'- cCGCACcgagACGcUGCGGCgCCGCC-C-CGCg -3'
miRNA:   3'- uGCGUG----UGC-AUGUCG-GGCGGcGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 113757 0.66 0.802356
Target:  5'- gACGCugGCGc---GCCUGCCGacggCGCc -3'
miRNA:   3'- -UGCGugUGCauguCGGGCGGCga--GCG- -5'
21550 3' -59.2 NC_004812.1 + 117794 0.66 0.802356
Target:  5'- gGCGCGCGCc-GCAGCCC-CCGacaccUGCg -3'
miRNA:   3'- -UGCGUGUGcaUGUCGGGcGGCga---GCG- -5'
21550 3' -59.2 NC_004812.1 + 146031 0.66 0.802356
Target:  5'- gGCGCAUAaaUGCc-CCCGgcaCCGCUCGCc -3'
miRNA:   3'- -UGCGUGUgcAUGucGGGC---GGCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 85728 0.66 0.802356
Target:  5'- gGC-CGCACGUGC-GCCuaCGCgGCcuUCGCg -3'
miRNA:   3'- -UGcGUGUGCAUGuCGG--GCGgCG--AGCG- -5'
21550 3' -59.2 NC_004812.1 + 150368 0.66 0.802356
Target:  5'- cGCGgGCGCGagACGGCCgcgggGCCGCg-GCg -3'
miRNA:   3'- -UGCgUGUGCa-UGUCGGg----CGGCGagCG- -5'
21550 3' -59.2 NC_004812.1 + 139459 0.66 0.802356
Target:  5'- gACGC-CACGacucccccCGGCCCGaCCGCg-GCa -3'
miRNA:   3'- -UGCGuGUGCau------GUCGGGC-GGCGagCG- -5'
21550 3' -59.2 NC_004812.1 + 36323 0.66 0.802356
Target:  5'- uCGCACACGgcguccugGCcgugguccauGCCCGCCGUcCGg -3'
miRNA:   3'- uGCGUGUGCa-------UGu---------CGGGCGGCGaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.