miRNA display CGI


Results 1 - 20 of 713 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21550 3' -59.2 NC_004812.1 + 77147 0.76 0.260494
Target:  5'- gGCGC-CGCGUcucggccgGCAGCCCGCCcGCggcggCGCc -3'
miRNA:   3'- -UGCGuGUGCA--------UGUCGGGCGG-CGa----GCG- -5'
21550 3' -59.2 NC_004812.1 + 125617 0.78 0.210552
Target:  5'- cCGCGCGCGcccCGGCCCGUCcCUCGCg -3'
miRNA:   3'- uGCGUGUGCau-GUCGGGCGGcGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 40406 0.78 0.210552
Target:  5'- cGCGCGagccaggcCGCGUAgUAGCCCGCCacggcGCUCGCa -3'
miRNA:   3'- -UGCGU--------GUGCAU-GUCGGGCGG-----CGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 19403 0.78 0.215666
Target:  5'- gACGCGCGCGgucACGGCCUGCgCGUggccgCGCg -3'
miRNA:   3'- -UGCGUGUGCa--UGUCGGGCG-GCGa----GCG- -5'
21550 3' -59.2 NC_004812.1 + 55622 0.77 0.231649
Target:  5'- gGCGguCcGCGUACAGCcgCCGgCGCUCGCg -3'
miRNA:   3'- -UGCguG-UGCAUGUCG--GGCgGCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 97358 0.77 0.242851
Target:  5'- cGCGCAC-CGccgccaaGCAGCUCGCCGCggUCGCg -3'
miRNA:   3'- -UGCGUGuGCa------UGUCGGGCGGCG--AGCG- -5'
21550 3' -59.2 NC_004812.1 + 131522 0.77 0.245145
Target:  5'- -gGCGCGCGgcgGCgccgccccgucgaggAGCCCGCCGC-CGCg -3'
miRNA:   3'- ugCGUGUGCa--UG---------------UCGGGCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 96751 0.76 0.2545
Target:  5'- gGCGUcUACGUGCGGCgCGCCG-UCGCg -3'
miRNA:   3'- -UGCGuGUGCAUGUCGgGCGGCgAGCG- -5'
21550 3' -59.2 NC_004812.1 + 130414 0.76 0.2545
Target:  5'- gGCGCGCGCGc---G-CCGCCGCUCGCu -3'
miRNA:   3'- -UGCGUGUGCauguCgGGCGGCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 152679 0.78 0.205543
Target:  5'- cGCGCGCGcCGUgccgcgccgcGCGGcCCCGCCGC-CGCg -3'
miRNA:   3'- -UGCGUGU-GCA----------UGUC-GGGCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 155577 0.78 0.195834
Target:  5'- gGCGCGCGCGgGCGGCCgGgCC-CUCGCg -3'
miRNA:   3'- -UGCGUGUGCaUGUCGGgC-GGcGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 67547 0.79 0.1733
Target:  5'- -gGCGCGCGUGCAGCagcucUCGCCGC-CGCc -3'
miRNA:   3'- ugCGUGUGCAUGUCG-----GGCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 115477 0.82 0.119012
Target:  5'- cCGCGCGCGUGCGGCCgCGCCGggCGg -3'
miRNA:   3'- uGCGUGUGCAUGUCGG-GCGGCgaGCg -5'
21550 3' -59.2 NC_004812.1 + 125647 0.81 0.138517
Target:  5'- uGCGCGCGCGUGgcGCCgCGCCGC-CGCg -3'
miRNA:   3'- -UGCGUGUGCAUguCGG-GCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 77045 0.8 0.142041
Target:  5'- cGCGCACGCGcGCGGCgaGgCGCUCGCg -3'
miRNA:   3'- -UGCGUGUGCaUGUCGggCgGCGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 25537 0.8 0.148219
Target:  5'- cCGCACGCGUGCAcgcucuccgcgggcGCCuCGCCggGCUCGCg -3'
miRNA:   3'- uGCGUGUGCAUGU--------------CGG-GCGG--CGAGCG- -5'
21550 3' -59.2 NC_004812.1 + 126433 0.8 0.153108
Target:  5'- uCGCGCGCGccgAGCCCGCCGCgCGCu -3'
miRNA:   3'- uGCGUGUGCaugUCGGGCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 116518 0.8 0.153108
Target:  5'- gACGCGCGCccgGCcGCCCGCCGCcCGCc -3'
miRNA:   3'- -UGCGUGUGca-UGuCGGGCGGCGaGCG- -5'
21550 3' -59.2 NC_004812.1 + 153835 0.8 0.156968
Target:  5'- cUGCGC-CGUGCuGCCCGCCGCgcagUGCg -3'
miRNA:   3'- uGCGUGuGCAUGuCGGGCGGCGa---GCG- -5'
21550 3' -59.2 NC_004812.1 + 6422 0.79 0.164953
Target:  5'- gGCGCGC-CGUACAGCCCGCC-Cg-GCg -3'
miRNA:   3'- -UGCGUGuGCAUGUCGGGCGGcGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.