miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21550 5' -56.7 NC_004812.1 + 89838 0.66 0.885936
Target:  5'- -gGCGCGGgUGCAGGcgUGcgaguCGGUGc- -3'
miRNA:   3'- agCGCGUCgACGUCCa-ACu----GCCACac -5'
21550 5' -56.7 NC_004812.1 + 21776 0.66 0.885936
Target:  5'- -aGUGCAGCaGCAGGac-GCGGUcgGUGa -3'
miRNA:   3'- agCGCGUCGaCGUCCaacUGCCA--CAC- -5'
21550 5' -56.7 NC_004812.1 + 94410 0.66 0.885936
Target:  5'- cUCGCGCGGCcGgGGGgccGAauCGGUGg- -3'
miRNA:   3'- -AGCGCGUCGaCgUCCaa-CU--GCCACac -5'
21550 5' -56.7 NC_004812.1 + 30940 0.66 0.885246
Target:  5'- aUCGCGCGGCccgagGCcuccccgagggucAGGUacgccgcgacguUGGCGGUGa- -3'
miRNA:   3'- -AGCGCGUCGa----CG-------------UCCA------------ACUGCCACac -5'
21550 5' -56.7 NC_004812.1 + 141835 0.66 0.878933
Target:  5'- cUC-CGCGGCccggucuucgaGCAGGgcgUGACGGUGg- -3'
miRNA:   3'- -AGcGCGUCGa----------CGUCCa--ACUGCCACac -5'
21550 5' -56.7 NC_004812.1 + 75861 0.66 0.864271
Target:  5'- aCGagauGCUGCAGGUgacgGACGGgGUGu -3'
miRNA:   3'- aGCgcguCGACGUCCAa---CUGCCaCAC- -5'
21550 5' -56.7 NC_004812.1 + 22074 0.66 0.861237
Target:  5'- cCGCacaaaaaauccacCAGCUGCGcGUUGGCGGUGg- -3'
miRNA:   3'- aGCGc------------GUCGACGUcCAACUGCCACac -5'
21550 5' -56.7 NC_004812.1 + 106888 0.67 0.848772
Target:  5'- aUCGCGCAGCUGCugaucgcgGGGUccGACgcgcuccccugGGUGc- -3'
miRNA:   3'- -AGCGCGUCGACG--------UCCAa-CUG-----------CCACac -5'
21550 5' -56.7 NC_004812.1 + 116122 0.67 0.848772
Target:  5'- --cUGCAGCUcGCGGcGaUGGCGGUGUa -3'
miRNA:   3'- agcGCGUCGA-CGUC-CaACUGCCACAc -5'
21550 5' -56.7 NC_004812.1 + 101943 0.67 0.840725
Target:  5'- aCGCGCGGC-GCGGGc-GGCGGg--- -3'
miRNA:   3'- aGCGCGUCGaCGUCCaaCUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 63806 0.67 0.840725
Target:  5'- cCGCGCAGC-GCGGGgUGAuCGGcGa- -3'
miRNA:   3'- aGCGCGUCGaCGUCCaACU-GCCaCac -5'
21550 5' -56.7 NC_004812.1 + 127846 0.67 0.840725
Target:  5'- gCGCGCAGCgcgggcgGCAGGgcGuCGGg--- -3'
miRNA:   3'- aGCGCGUCGa------CGUCCaaCuGCCacac -5'
21550 5' -56.7 NC_004812.1 + 2338 0.67 0.840725
Target:  5'- gCGCGCAGCgcgggcgGCAGGgcGuCGGg--- -3'
miRNA:   3'- aGCGCGUCGa------CGUCCaaCuGCCacac -5'
21550 5' -56.7 NC_004812.1 + 19382 0.67 0.840725
Target:  5'- cCGCGCGGaCguccaGCAGGgccagGACGGcgggGUGa -3'
miRNA:   3'- aGCGCGUC-Ga----CGUCCaa---CUGCCa---CAC- -5'
21550 5' -56.7 NC_004812.1 + 129664 0.67 0.815474
Target:  5'- -gGgGCAcGaCUGCGGGcUGGCGGUGg- -3'
miRNA:   3'- agCgCGU-C-GACGUCCaACUGCCACac -5'
21550 5' -56.7 NC_004812.1 + 70872 0.67 0.815474
Target:  5'- -gGCGUGGCUGCgcgGGGggGGCGGg--- -3'
miRNA:   3'- agCGCGUCGACG---UCCaaCUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 71807 0.67 0.814605
Target:  5'- cCGuCGUGGCgUGgGGGUUGGCGGUaggggacGUGg -3'
miRNA:   3'- aGC-GCGUCG-ACgUCCAACUGCCA-------CAC- -5'
21550 5' -56.7 NC_004812.1 + 118094 0.67 0.806713
Target:  5'- cCGCGUgcuccGGCUgucccuggaGCAGGcgaucggGACGGUGUGu -3'
miRNA:   3'- aGCGCG-----UCGA---------CGUCCaa-----CUGCCACAC- -5'
21550 5' -56.7 NC_004812.1 + 50069 0.67 0.806713
Target:  5'- cCGCGCccGCUGCgAGGUggGGCGcGUGcUGg -3'
miRNA:   3'- aGCGCGu-CGACG-UCCAa-CUGC-CAC-AC- -5'
21550 5' -56.7 NC_004812.1 + 77098 0.68 0.798693
Target:  5'- cUGCGCGGCgaugacguugcccccGCGGGggcggUGGCGGUcgGUGa -3'
miRNA:   3'- aGCGCGUCGa--------------CGUCCa----ACUGCCA--CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.