miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21550 5' -56.7 NC_004812.1 + 14474 0.68 0.797794
Target:  5'- -gGCGCGGggGCGGGgcccugGAUGGUGa- -3'
miRNA:   3'- agCGCGUCgaCGUCCaa----CUGCCACac -5'
21550 5' -56.7 NC_004812.1 + 131559 0.68 0.797794
Target:  5'- cCGCGCGGCUaucgacaccgcGCAGGc--GCGGgggGUGg -3'
miRNA:   3'- aGCGCGUCGA-----------CGUCCaacUGCCa--CAC- -5'
21550 5' -56.7 NC_004812.1 + 6050 0.68 0.797794
Target:  5'- cCGCGCGGCUaucgacaccgcGCAGGc--GCGGgggGUGg -3'
miRNA:   3'- aGCGCGUCGA-----------CGUCCaacUGCCa--CAC- -5'
21550 5' -56.7 NC_004812.1 + 29344 0.68 0.788725
Target:  5'- -gGCGCGGCUGCgAGGggGcGCGGg--- -3'
miRNA:   3'- agCGCGUCGACG-UCCaaC-UGCCacac -5'
21550 5' -56.7 NC_004812.1 + 154852 0.68 0.788725
Target:  5'- -gGCGCGGCUGCgAGGggGcGCGGg--- -3'
miRNA:   3'- agCGCGUCGACG-UCCaaC-UGCCacac -5'
21550 5' -56.7 NC_004812.1 + 150577 0.68 0.779515
Target:  5'- cCGCGCGGCgGCGGGcuccucGACGGg--- -3'
miRNA:   3'- aGCGCGUCGaCGUCCaa----CUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 25068 0.68 0.779515
Target:  5'- cCGCGCGGCgGCGGGcuccucGACGGg--- -3'
miRNA:   3'- aGCGCGUCGaCGUCCaa----CUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 16169 0.68 0.770173
Target:  5'- -gGuCGCGGCgGUGGaGUUGGCGGUgGUGg -3'
miRNA:   3'- agC-GCGUCGaCGUC-CAACUGCCA-CAC- -5'
21550 5' -56.7 NC_004812.1 + 5807 0.68 0.760708
Target:  5'- cUGCGgGGCUGCGGGgcgcGGCGGg--- -3'
miRNA:   3'- aGCGCgUCGACGUCCaa--CUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 36708 0.68 0.760708
Target:  5'- cUGCGgGGCUGCGGGgcgcGGCGGg--- -3'
miRNA:   3'- aGCGCgUCGACGUCCaa--CUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 121548 0.68 0.751128
Target:  5'- gUCGCGCGGCUGguGGcgcGCGGc--- -3'
miRNA:   3'- -AGCGCGUCGACguCCaacUGCCacac -5'
21550 5' -56.7 NC_004812.1 + 134533 0.68 0.751128
Target:  5'- aCGCGCAGCUGguGGauuuuUUGuGCGGg--- -3'
miRNA:   3'- aGCGCGUCGACguCC-----AAC-UGCCacac -5'
21550 5' -56.7 NC_004812.1 + 97440 0.68 0.751128
Target:  5'- cUGCuGCAGCUGCugagccgccGGUcgaaccUGGCGGUGUa -3'
miRNA:   3'- aGCG-CGUCGACGu--------CCA------ACUGCCACAc -5'
21550 5' -56.7 NC_004812.1 + 59971 0.69 0.731664
Target:  5'- gUCGCGCGGC-GCcGGcucgUGGCGGccGUGg -3'
miRNA:   3'- -AGCGCGUCGaCGuCCa---ACUGCCa-CAC- -5'
21550 5' -56.7 NC_004812.1 + 148983 0.69 0.731664
Target:  5'- gCGCGCGGCga-GGGaagGAgGGUGUGc -3'
miRNA:   3'- aGCGCGUCGacgUCCaa-CUgCCACAC- -5'
21550 5' -56.7 NC_004812.1 + 11317 0.69 0.731664
Target:  5'- cCGCGgGGCggggGCcGGUgggcugggccGACGGUGUGg -3'
miRNA:   3'- aGCGCgUCGa---CGuCCAa---------CUGCCACAC- -5'
21550 5' -56.7 NC_004812.1 + 23475 0.69 0.731664
Target:  5'- gCGCGCGGCga-GGGaagGAgGGUGUGc -3'
miRNA:   3'- aGCGCGUCGacgUCCaa-CUgCCACAC- -5'
21550 5' -56.7 NC_004812.1 + 146459 0.69 0.721799
Target:  5'- gUUGCGCAgGCUGgGGGggGugGGcGUa -3'
miRNA:   3'- -AGCGCGU-CGACgUCCaaCugCCaCAc -5'
21550 5' -56.7 NC_004812.1 + 147929 0.69 0.721799
Target:  5'- cCGuCGCAGgaGC-GGUUGGCGGUa-- -3'
miRNA:   3'- aGC-GCGUCgaCGuCCAACUGCCAcac -5'
21550 5' -56.7 NC_004812.1 + 11690 0.69 0.701845
Target:  5'- cUCGgGCAGCUGCGGGUgguacaGACaGGg--- -3'
miRNA:   3'- -AGCgCGUCGACGUCCAa-----CUG-CCacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.